genome.fa.s6086.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01006086.1 Kokia drynarioides strain JFW-HI SEQ_120580, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136613

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--29	2	14.5	2	100	0	58	48	0	0	51	1.00
549--621	24	2.8	25	73	10	67	50	9	15	24	1.73
6056--6151	49	2.0	49	93	0	165	27	31	2	39	1.68
7359--7444	41	2.1	41	88	0	127	25	30	2	41	1.68
8829--8895	30	2.2	30	89	0	98	32	8	20	37	1.84
11315--11376	28	2.2	28	88	0	88	24	29	14	32	1.94
18554--18593	21	1.9	21	89	0	62	20	15	27	37	1.92
20509--20681	85	2.0	86	93	1	294	46	15	9	28	1.78
28010--28607	82	7.4	82	84	3	683	45	12	13	28	1.79
28010--28607	246	2.5	246	85	4	791	45	12	13	28	1.79
29085--29355	50	5.4	51	82	9	331	54	8	4	32	1.52
29084--29355	102	2.7	102	91	1	422	54	8	4	31	1.51
31677--31914	51	4.6	51	85	2	289	32	15	23	27	1.95
34677--34914	51	4.6	51	86	3	300	32	14	23	29	1.94
38928--39091	49	3.4	49	90	2	260	28	29	2	40	1.69
40310--40486	41	3.9	43	80	14	173	28	28	2	40	1.70
40332--40465	41	3.3	41	88	0	196	28	29	2	39	1.71
45743--45822	24	3.2	24	82	7	79	2	53	1	42	1.22
45744--45824	28	2.9	28	88	0	117	2	54	1	41	1.21
49144--49180	14	2.4	16	78	13	51	0	64	2	32	1.07
49147--49202	23	2.5	22	82	2	67	1	60	1	35	1.17
52943--52978	18	1.9	18	88	5	54	47	0	16	36	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54267--54350	42	2.0	42	88	0	123	47	20	0	32	1.50
54531--54581	25	2.0	25	92	0	84	11	15	27	45	1.81
56422--56477	28	2.0	28	96	0	103	33	16	14	35	1.88
61972--62029	29	2.0	29	89	0	89	39	6	29	24	1.81
66362--66725	195	1.9	195	86	4	520	39	13	15	30	1.86
66551--67568	216	4.7	216	88	2	1472	40	14	16	27	1.88
67563--69555	216	9.2	216	81	3	2223	40	14	16	27	1.88
67563--69555	861	2.3	862	83	4	2428	40	14	16	27	1.88
73661--73707	20	2.4	20	82	3	60	53	2	0	44	1.12
74909--75019	30	3.7	30	77	7	84	24	21	22	31	1.98
81963--82021	29	2.1	29	87	9	86	47	0	1	50	1.11
82924--83004	40	2.0	40	95	0	144	40	13	3	41	1.62
88201--88246	19	2.4	19	96	0	83	39	19	19	21	1.93
91000--91045	22	2.0	24	83	12	60	65	6	0	28	1.17
92094--92175	7	12.0	7	73	10	64	41	18	21	18	1.90
92091--92148	20	3.0	20	73	12	57	44	15	22	17	1.86
92091--92175	14	6.3	13	77	8	89	43	17	21	17	1.88
93468--93589	58	2.1	58	87	3	174	32	1	19	45	1.60
93722--93748	9	3.0	9	100	0	54	11	11	22	55	1.66
94500--94545	25	1.9	23	82	8	56	67	0	0	32	0.91
96841--96888	17	2.9	16	78	9	60	27	2	0	70	0.98
96839--96894	14	3.8	14	76	19	51	28	1	0	69	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100504--100536	13	2.4	14	85	10	50	57	0	6	36	1.23
100587--100636	16	2.9	17	76	8	57	60	0	6	34	1.21
100589--100636	18	2.8	17	78	6	53	62	0	4	33	1.14
108916--108945	12	2.5	12	94	0	51	36	0	3	60	1.14
108942--108991	17	3.2	16	77	11	50	60	0	2	38	1.09
108955--108992	15	2.5	16	83	12	53	57	0	0	42	0.98
112915--112996	20	4.2	20	84	3	112	32	25	29	12	1.92
112920--112997	39	2.0	40	89	2	122	32	25	29	12	1.93
114547--114975	215	2.0	212	94	1	741	27	21	10	39	1.87
118663--118706	22	2.0	22	95	0	79	34	4	22	38	1.75
131098--131137	18	2.3	18	86	4	55	17	15	12	55	1.70
131945--131974	15	2.0	15	93	0	51	26	6	16	50	1.70
133276--133305	14	2.2	14	94	5	53	30	23	10	36	1.87
134279--134307	3	9.7	3	100	0	58	68	0	31	0	0.89

Tables:   1

The End!