Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006089.1 Kokia drynarioides strain JFW-HI SEQ_120584, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3279
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34


Found at i:1136 original size:20 final size:20

Alignment explanation


    Indices: 1088--1142  Score: 60
    Period size: 20  Copynumber: 2.8  Consensus size: 20

       1078 TTAGCCATTC

                           *    
       1088 TTTTTATTTTTATTTTATTA
          1 TTTTTATTTTTATTTAATTA

               **                
       1108 TTTGCATTTTTAATTTAATT-
          1 TTTTTATTTTT-ATTTAATTA

                            
       1128 TTTTTA-TTTTATTTA
          1 TTTTTATTTTTATTTA

       1143 TTTCCTTTTA


Statistics
Matches: 29,  Mismatches: 5, Indels: 4
        0.76            0.13        0.11

Matches are distributed among these distances:
  18    5  0.17
  19    4  0.14
  20   13  0.45
  21    7  0.24

ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75


Consensus pattern (20 bp):   
TTTTTATTTTTATTTAATTA
Done.