Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006100.1 Kokia drynarioides strain JFW-HI SEQ_120602, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2286
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36


Found at i:677 original size:23 final size:22

Alignment explanation


    Indices: 642--685  Score: 63
    Period size: 23  Copynumber: 2.0  Consensus size: 22

        632 TTTTATTCAC

                                    
        642 GTTTTGAGGGTTTACTATTTTTCG
          1 GTTTTGAGGGTTTA-T-TTTTTCG

                                 
        666 GTTTTG-GGGTTTATTTTTTC
          1 GTTTTGAGGGTTTATTTTTTC

        686 TCCATCTTTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  21    6  0.30
  22    1  0.05
  23    7  0.35
  24    6  0.30

ACGTcount: A:0.09, C:0.07, G:0.25, T:0.59


Consensus pattern (22 bp):   
GTTTTGAGGGTTTATTTTTTCG
Done.