Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006101.1 Kokia drynarioides strain JFW-HI SEQ_120603, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2286
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36


Found at i:676 original size:23 final size:22

Alignment explanation


    Indices: 643--685  Score: 61
    Period size: 23  Copynumber: 1.9  Consensus size: 22

        633 TTTATTCACG

                                    
        643 TTTTGAGGGTTTACTATTTTTCGA
          1 TTTTGAGGGTTTA-T-TTTTTCGA

                                
        667 TTTTG-GGGTTTATTTTTTC
          1 TTTTGAGGGTTTATTTTTTC

        686 TCCATCTTTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  21    6  0.32
  22    1  0.05
  23    7  0.37
  24    5  0.26

ACGTcount: A:0.12, C:0.07, G:0.21, T:0.60


Consensus pattern (22 bp):   
TTTTGAGGGTTTATTTTTTCGA
Done.