Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006115.1 Kokia drynarioides strain JFW-HI SEQ_120631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 765

Length: 1275
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.37


Found at i:363 original size:25 final size:24

Alignment explanation


    Indices: 305--363  Score: 66
    Period size: 25  Copynumber: 2.4  Consensus size: 24

        295 TTTATAGTTT

                                *   
        305 TTATTAATTTTTAATTTTTACAAA
          1 TTATTAATTTTTAATTTTTAAAAA

              *                       
        329 TTTTTGAATTTTTGAA-TTTTAAAAA
          1 TTATT-AATTTTT-AATTTTTAAAAA

                      
        354 TTAATTAATT
          1 TT-ATTAATT

        364 GCTAATGTGA


Statistics
Matches: 29,  Mismatches: 3, Indels: 5
        0.78            0.08        0.14

Matches are distributed among these distances:
  24    4  0.14
  25   21  0.72
  26    4  0.14

ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58


Consensus pattern (24 bp):   
TTATTAATTTTTAATTTTTAAAAA
Done.