Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006121.1 Kokia drynarioides strain JFW-HI SEQ_120641, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1478
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:1277 original size:14 final size:14

Alignment explanation


    Indices: 1242--1297  Score: 53
    Period size: 15  Copynumber: 3.9  Consensus size: 14

       1232 AAATATCTCT

                          
       1242 AAAATTTT-TTT-G
          1 AAAATTTTCTTTAG

                 *         
       1254 AAATAATTTCTTTAG
          1 AAA-ATTTTCTTTAG

                            
       1269 AAAATTTTCTTTTCAG
          1 AAAATTTTC-TTT-AG

                  *      
       1285 AAAATTCTCTTTA
          1 AAAATTTTCTTTA

       1298 CAACTTTTTA


Statistics
Matches: 36,  Mismatches: 3, Indels: 8
        0.77            0.06        0.17

Matches are distributed among these distances:
  12    3  0.08
  13    4  0.11
  14    9  0.25
  15   10  0.28
  16   10  0.28

ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50


Consensus pattern (14 bp):   
AAAATTTTCTTTAG
Done.