Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006123.1 Kokia drynarioides strain JFW-HI SEQ_120643, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 877

Length: 1463
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:1462 original size:21 final size:22

Alignment explanation


    Indices: 1421--1462  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       1411 TAAATATTAG

                          *       
       1421 ATTAAATTTAATATTAAATTTT
          1 ATTAAATTTAATATGAAATTTT

                                  
       1443 ATTAAA-TTAATA-GAATATTT
          1 ATTAAATTTAATATGAA-ATTT

       1463 A


Statistics
Matches: 18,  Mismatches: 1, Indels: 3
        0.82            0.05        0.14

Matches are distributed among these distances:
  20    2  0.11
  21   10  0.56
  22    6  0.33

ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50


Consensus pattern (22 bp):   
ATTAAATTTAATATGAAATTTT
Done.