Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006129.1 Kokia drynarioides strain JFW-HI SEQ_120649, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2113
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32


Found at i:1945 original size:17 final size:18

Alignment explanation


    Indices: 1916--1955  Score: 73
    Period size: 17  Copynumber: 2.3  Consensus size: 18

       1906 TTAACTTGAA

                              
       1916 AATAATAATATAAAAATT
          1 AATAATAATATAAAAATT

                              
       1934 AATAAT-ATATAAAAATT
          1 AATAATAATATAAAAATT

                 
       1951 AATAA
          1 AATAA

       1956 ATCTATATAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  17   16  0.73
  18    6  0.27

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33


Consensus pattern (18 bp):   
AATAATAATATAAAAATT

Done.