Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006138.1 Kokia drynarioides strain JFW-HI SEQ_120672, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6927
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30


Found at i:4659 original size:28 final size:28

Alignment explanation


    Indices: 4611--4676  Score: 89
    Period size: 28  Copynumber: 2.4  Consensus size: 28

       4601 TAAGGAATTT

                           *             
       4611 ATCAAATTAATCCTTTTACTATTAAATAA
          1 ATCAAATTAATCCTTATACTATTAAA-AA

                 *                      
       4640 ATCAATTTAAT-CTTATACTATTAAAAA
          1 ATCAAATTAATCCTTATACTATTAAAAA

              *       
       4667 ATTAAATTAA
          1 ATCAAATTAA

       4677 AATAGAATTA


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  27   10  0.30
  28   13  0.39
  29   10  0.30

ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41


Consensus pattern (28 bp):   
ATCAAATTAATCCTTATACTATTAAAAA
Done.