Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006140.1 Kokia drynarioides strain JFW-HI SEQ_120674, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1704
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35


Found at i:879 original size:29 final size:31

Alignment explanation


    Indices: 846--914  Score: 79
    Period size: 31  Copynumber: 2.3  Consensus size: 31

        836 TTTTAGGTGC

                      *                    
        846 TTTCATTTTGGTCAC-ACAAATA-AAAAAAT
          1 TTTCATTTTGATCACTACAAATAGAAAAAAT

                 *            * *    *     
        875 TTTCAATTTGATCACTACTATTAGAGAAAAT
          1 TTTCATTTTGATCACTACAAATAGAAAAAAT

                     
        906 TTTCATTTT
          1 TTTCATTTT

        915 AATCCCCAAA


Statistics
Matches: 32,  Mismatches: 6, Indels: 2
        0.80            0.15        0.05

Matches are distributed among these distances:
  29   13  0.41
  30    5  0.16
  31   14  0.44

ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42


Consensus pattern (31 bp):   
TTTCATTTTGATCACTACAAATAGAAAAAAT
Done.