Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006143.1 Kokia drynarioides strain JFW-HI SEQ_120677, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63688
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 5 characters in sequence are not A, C, G, or T
Found at i:4798 original size:27 final size:27
Alignment explanation
Indices: 4768--4819 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
4758 TGGAATGCTC
*
4768 ATGCTAGAATATTTGCTAGACTGTACT
1 ATGCTAGAATATTTACTAGACTGTACT
*
4795 ATGCTAGGATATTTACTAGACTGTA
1 ATGCTAGAATATTTACTAGACTGTA
4820 ATAGAGAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (27 bp):
ATGCTAGAATATTTACTAGACTGTACT
Found at i:7575 original size:16 final size:17
Alignment explanation
Indices: 7556--7598 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
7546 AAATATTTAT
7556 TTTATTTATTTTA-ATA
1 TTTATTTATTTTATATA
* *
7572 TTTAATAATTTTATATA
1 TTTATTTATTTTATATA
7589 TTT-TTTATTT
1 TTTATTTATTT
7599 ATTGAAAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTATTTATTTTATATA
Found at i:11477 original size:34 final size:34
Alignment explanation
Indices: 11411--11545 Score: 137
Period size: 34 Copynumber: 4.0 Consensus size: 34
11401 ACAGTTTATA
* * * * * *
11411 TGGTGTGTTGGATGGACTAGCTTATGCAAGCATT
1 TGGTGTGTTGGTTGGATTGGCTCATTCGAGCATT
* *
11445 TGGTGTGTTTGTTGGATTGGCTCATTCGAGCATA
1 TGGTGTGTTGGTTGGATTGGCTCATTCGAGCATT
* * * *
11479 TGGTGTGTTGGATGGACTAGCTC-TTACGGGCATT
1 TGGTGTGTTGGTTGGATTGGCTCATT-CGAGCATT
*
11513 TGGTATGTTGGTTGGATTGGCTCATTCGAGCAT
1 TGGTGTGTTGGTTGGATTGGCTCATTCGAGCAT
11546 ATAGTGTATT
Statistics
Matches: 80, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
33 2 0.03
34 76 0.95
35 2 0.03
ACGTcount: A:0.16, C:0.13, G:0.33, T:0.38
Consensus pattern (34 bp):
TGGTGTGTTGGTTGGATTGGCTCATTCGAGCATT
Found at i:11492 original size:68 final size:68
Alignment explanation
Indices: 11408--11561 Score: 220
Period size: 68 Copynumber: 2.3 Consensus size: 68
11398 GTTACAGTTT
* * *
11408 ATATGGTGTGTTGGATGGACTAGCT-TATGCAAGCATTTGGTGTGTTTGTTGGATTGGCTCATTC
1 ATATGGTGTGTTGGATGGACTAGCTCT-TACAAGCATTTGGTATGTTGGTTGGATTGGCTCATTC
11472 GAGC
65 GAGC
**
11476 ATATGGTGTGTTGGATGGACTAGCTCTTACGGGCATTTGGTATGTTGGTTGGATTGGCTCATTCG
1 ATATGGTGTGTTGGATGGACTAGCTCTTACAAGCATTTGGTATGTTGGTTGGATTGGCTCATTCG
11541 AGC
66 AGC
* * *
11544 ATATAGTGTATTTGATGG
1 ATATGGTGTGTTGGATGG
11562 TTAACTGTGT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
68 76 0.99
69 1 0.01
ACGTcount: A:0.18, C:0.11, G:0.32, T:0.38
Consensus pattern (68 bp):
ATATGGTGTGTTGGATGGACTAGCTCTTACAAGCATTTGGTATGTTGGTTGGATTGGCTCATTCG
AGC
Found at i:16656 original size:28 final size:28
Alignment explanation
Indices: 16616--16671 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
16606 CCGTTAGTAG
16616 AATTTGCATACAATAATAGCTATCAATC
1 AATTTGCATACAATAATAGCTATCAATC
16644 AATTTGCATACAATAATAGCTATCAATC
1 AATTTGCATACAATAATAGCTATCAATC
16672 CAGTATTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (28 bp):
AATTTGCATACAATAATAGCTATCAATC
Found at i:19868 original size:34 final size:34
Alignment explanation
Indices: 19825--19974 Score: 156
Period size: 34 Copynumber: 4.4 Consensus size: 34
19815 CAGTTTATAC
* *
19825 GGTGTGTTGGATGGACTAGCTCAGACGAGCATTT
1 GGTGTGTTGGATGGACTAGCTCATACGAGCATAT
* * * * *
19859 GGTGTGTTGGTTGGATTGGCTCATTCAAGCATAT
1 GGTGTGTTGGATGGACTAGCTCATACGAGCATAT
* *
19893 GGTGTGTTGGATGGACTAGCTCTTACGAGCATTT
1 GGTGTGTTGGATGGACTAGCTCATACGAGCATAT
* * * * * *
19927 GGTATGTTGGTTAGATTGGCTCATTCGAGCATAT
1 GGTGTGTTGGATGGACTAGCTCATACGAGCATAT
*
19961 GGTGTGTTAGATGG
1 GGTGTGTTGGATGG
19975 TTAACTGTGT
Statistics
Matches: 90, Mismatches: 26, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
34 90 1.00
ACGTcount: A:0.19, C:0.12, G:0.34, T:0.35
Consensus pattern (34 bp):
GGTGTGTTGGATGGACTAGCTCATACGAGCATAT
Found at i:19908 original size:68 final size:68
Alignment explanation
Indices: 19825--19974 Score: 246
Period size: 68 Copynumber: 2.2 Consensus size: 68
19815 CAGTTTATAC
* *
19825 GGTGTGTTGGATGGACTAGCTCAGACGAGCATTTGGTGTGTTGGTTGGATTGGCTCATTCAAGCA
1 GGTGTGTTGGATGGACTAGCTCAGACGAGCATTTGGTATGTTGGTTAGATTGGCTCATTCAAGCA
19890 TAT
66 TAT
** *
19893 GGTGTGTTGGATGGACTAGCTCTTACGAGCATTTGGTATGTTGGTTAGATTGGCTCATTCGAGCA
1 GGTGTGTTGGATGGACTAGCTCAGACGAGCATTTGGTATGTTGGTTAGATTGGCTCATTCAAGCA
19958 TAT
66 TAT
*
19961 GGTGTGTTAGATGG
1 GGTGTGTTGGATGG
19975 TTAACTGTGT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 76 1.00
ACGTcount: A:0.19, C:0.12, G:0.34, T:0.35
Consensus pattern (68 bp):
GGTGTGTTGGATGGACTAGCTCAGACGAGCATTTGGTATGTTGGTTAGATTGGCTCATTCAAGCA
TAT
Found at i:29855 original size:88 final size:88
Alignment explanation
Indices: 29706--29879 Score: 258
Period size: 88 Copynumber: 2.0 Consensus size: 88
29696 TTCCACGAGG
* * * * *
29706 GAGATCTAGTTTTGAAAAAGATACTTCCCATACATAAGGACACTTGAGGAAAATGGATGCCCAAT
1 GAGATCTAGTTCTAAAAAAGATACTTCCCATACACAAGGACACTCGAAGAAAATGGATGCCCAAT
* *
29771 TGGGAGGGACCTTATGTAGTGCA
66 TAGGAGGGACCTTATATAGTGCA
* * *
29794 GAGATCTAGTTCTAAAAAAGATACTTCTCATACACAAGGACTCTCGAAGAAAATTGATGCCCAAT
1 GAGATCTAGTTCTAAAAAAGATACTTCCCATACACAAGGACACTCGAAGAAAATGGATGCCCAAT
29859 TAGGAGGGACCTTATATAGTG
66 TAGGAGGGACCTTATATAGTG
29880 AAGAAAGCTT
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 76 1.00
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (88 bp):
GAGATCTAGTTCTAAAAAAGATACTTCCCATACACAAGGACACTCGAAGAAAATGGATGCCCAAT
TAGGAGGGACCTTATATAGTGCA
Found at i:30950 original size:99 final size:99
Alignment explanation
Indices: 30781--31038 Score: 313
Period size: 99 Copynumber: 2.6 Consensus size: 99
30771 CCGTAATGGT
* * ** * *
30781 GAATCTGATACCCTGGAGATA--AAGGGAAAGGTTGAGGTCGTAATAGTGAACTCGGTACCTTAG
1 GAATCTGATACCATGGAGATATGAAGGGAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCTTAG
* *
30844 AAGATGTTATGAGAATGATTGAGGTCGCAACGAC
66 AAGATGTTATGAGAAGGATTGAGGTCACAACGAC
*
30878 GAATCTGATACCATGAAGATATGAAGGGAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCTTAG
1 GAATCTGATACCATGGAGATATGAAGGGAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCTTAG
* * * **
30943 ATGATGTTATGGGAAGGATTGAGGTCATAACGGT
66 AAGATGTTATGAGAAGGATTGAGGTCACAACGAC
* * ** * * *
30977 GAATCTAATACCTTGGAGGCATGAAAGGAAAGGTTGAGGCCGCAACGNCGAACCCGGTACCT
1 GAATCTGATACCATGGAGATATGAAGGGAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCT
31039 CAAAAGATAT
Statistics
Matches: 137, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
97 19 0.14
99 118 0.86
ACGTcount: A:0.32, C:0.16, G:0.31, T:0.21
Consensus pattern (99 bp):
GAATCTGATACCATGGAGATATGAAGGGAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCTTAG
AAGATGTTATGAGAAGGATTGAGGTCACAACGAC
Found at i:31084 original size:53 final size:53
Alignment explanation
Indices: 30997--31171 Score: 284
Period size: 53 Copynumber: 3.4 Consensus size: 53
30987 CCTTGGAGGC
* **
30997 ATGAAAGGAAAGGTT---GAGGCCGCAACGNCGAACCCGGTACCTCAAAAGAT
1 ATGAAGGGAAAGGTTGAGGAGGCCGCAACGGTGAACCCGGTACCTCAAAAGAT
31047 ATGAAGGGAAAGGTTGAGGAGGCCGCAACGGTGAACCCGGTACCTCAAAAGAT
1 ATGAAGGGAAAGGTTGAGGAGGCCGCAACGGTGAACCCGGTACCTCAAAAGAT
* *
31100 ATGAAGGGAAAGGTTGAGGAGGCCGCAACGGTGAACCCGGTACCTTAGAAGAT
1 ATGAAGGGAAAGGTTGAGGAGGCCGCAACGGTGAACCCGGTACCTCAAAAGAT
31153 ATGAAGGGAAAGGTTGAGG
1 ATGAAGGGAAAGGTTGAGG
31172 CCGTAACAAC
Statistics
Matches: 117, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
50 14 0.12
53 103 0.88
ACGTcount: A:0.34, C:0.17, G:0.34, T:0.14
Consensus pattern (53 bp):
ATGAAGGGAAAGGTTGAGGAGGCCGCAACGGTGAACCCGGTACCTCAAAAGAT
Found at i:31197 original size:50 final size:50
Alignment explanation
Indices: 30893--31330 Score: 362
Period size: 50 Copynumber: 8.7 Consensus size: 50
30883 TGATACCATG
* *
30893 AAGATATGAAGGGAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCTTAG
1 AAGATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAA
* * * * * ** * * *** *
30943 ATGATGTTATGGG-AAGGATTGAGGTCATAACGGTGAATCTAATACCTT-G
1 AAGATATGAAGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGGTACCTTAA
* ** * * *
30992 GAGGCATGAAAGGAAAGGTTGAGGCCGCAACGNCGAACCCGGTACCTCAA
1 AAGATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAA
* *
31042 AAGATATGAAGGGAAAGGTTGAGGAGGCCGCAACGGTGAACCCGGTACCTCAA
1 AAGATATGAAGGGAAAGGTT---GAGGCCGCAACGGCGAACCCGGTACCTTAA
* *
31095 AAGATATGAAGGGAAAGGTTGAGGAGGCCGCAACGGTGAACCCGGTACCTTAG
1 AAGATATGAAGGGAAAGGTT---GAGGCCGCAACGGCGAACCCGGTACCTTAA
* ** * * * *
31148 AAGATATGAAGGGAAAGGTTGAGGCCGTAACAACAAACTCGATACCTTAG
1 AAGATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAA
* * **
31198 AAGATATGATGGGAAAGGTTGAGGCCACAACGGCGAACTTGGTACC--AA
1 AAGATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAA
* * *** **
31246 GAAGATGTGATGGGAAAGGTTGAGGCCGCAATAACGAACCCAATACCTTAA
1 -AAGATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAA
* * *
31297 AAGATATGAAGGGAAATGTTAAGACCGCAACGGC
1 AAGATATGAAGGGAAAGGTTGAGGCCGCAACGGC
31331 AAATCTTATA
Statistics
Matches: 308, Mismatches: 71, Indels: 18
0.78 0.18 0.05
Matches are distributed among these distances:
48 1 0.00
49 67 0.22
50 139 0.45
51 2 0.01
53 99 0.32
ACGTcount: A:0.35, C:0.17, G:0.31, T:0.17
Consensus pattern (50 bp):
AAGATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAA
Found at i:31292 original size:99 final size:99
Alignment explanation
Indices: 30862--31330 Score: 370
Period size: 99 Copynumber: 4.7 Consensus size: 99
30852 ATGAGAATGA
* * * * * * *
30862 TTGAGGTCGCAACGACGAATCTGATACCAT-GAAGATATGAAGGGAAAGGTTGAGGTCGCAACGG
1 TTGAGGCCGCAACAACGAACCCGATACCTTAAAAGATATGAAGGGAAAGGTTGAGGCCGCAACGG
* * * * *
30926 CGAACCCGGTACCTTAGATGATGTTATGGG-AAGG
66 CGAACCCGGTACC-AAGAAGATATGAAGGGAAAGG
* ** *** * ** ** ** *
30960 ATTGAGGTCATAACGGTGAATCTAATACCTT-GGAGGCATGAAAGGAAAGGTTGAGGCCGCAACG
1 -TTGAGGCCGCAACAACGAACCCGATACCTTAAAAGATATGAAGGGAAAGGTTGAGGCCGCAACG
*
31024 NCGAACCCGGTACCTCAA-AAGATATGAAGGGAAAGG
65 GCGAACCCGGTA-C-CAAGAAGATATGAAGGGAAAGG
*** * *
31060 TTGAGGAGGCCGCAACGGTGAACCCGGTACCTCAAAAGATATGAAGGGAAAGGTTGAGGAGGCCG
1 TT---GAGGCCGCAACAACGAACCCGATACCTTAAAAGATATGAAGGGAAAGGTT---GAGGCCG
* *
31125 CAACGGTGAACCCGGTACCTTAGAAGATATGAAGGGAAAGG
60 CAACGGCGAACCCGGTACC-AAGAAGATATGAAGGGAAAGG
* * * * * *
31166 TTGAGGCCGTAACAACAAACTCGATACCTTAGAAGATATGATGGGAAAGGTTGAGGCCACAACGG
1 TTGAGGCCGCAACAACGAACCCGATACCTTAAAAGATATGAAGGGAAAGGTTGAGGCCGCAACGG
** * *
31231 CGAACTTGGTACCAAGAAGATGTGATGGGAAAGG
66 CGAACCCGGTACCAAGAAGATATGAAGGGAAAGG
* * * * *
31265 TTGAGGCCGCAATAACGAACCCAATACCTTAAAAGATATGAAGGGAAATGTTAAGACCGCAACGG
1 TTGAGGCCGCAACAACGAACCCGATACCTTAAAAGATATGAAGGGAAAGGTTGAGGCCGCAACGG
31330 C
66 C
31331 AAATCTTATA
Statistics
Matches: 297, Mismatches: 61, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
99 147 0.49
100 28 0.09
101 1 0.00
102 20 0.07
103 56 0.19
104 1 0.00
105 2 0.01
106 42 0.14
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.17
Consensus pattern (99 bp):
TTGAGGCCGCAACAACGAACCCGATACCTTAAAAGATATGAAGGGAAAGGTTGAGGCCGCAACGG
CGAACCCGGTACCAAGAAGATATGAAGGGAAAGG
Found at i:33710 original size:15 final size:15
Alignment explanation
Indices: 33690--33725 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
33680 GCAAATCATA
33690 TTTCATGTAATTTAT
1 TTTCATGTAATTTAT
33705 TTTCATGTAATTTAT
1 TTTCATGTAATTTAT
33720 TTTCAT
1 TTTCAT
33726 TTATGTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.25, C:0.08, G:0.06, T:0.61
Consensus pattern (15 bp):
TTTCATGTAATTTAT
Found at i:35161 original size:21 final size:21
Alignment explanation
Indices: 35117--35162 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
35107 CACATGGGCA
* *
35117 TGTGGGAAGGCCACACGGGTG
1 TGTGGGAAGGCCACACGAGCG
35138 TGTGGG-AGAGCCACACGAGCG
1 TGTGGGAAG-GCCACACGAGCG
35159 TGTG
1 TGTG
35163 ACCCCTGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.20, C:0.20, G:0.46, T:0.15
Consensus pattern (21 bp):
TGTGGGAAGGCCACACGAGCG
Found at i:36534 original size:22 final size:22
Alignment explanation
Indices: 36504--36545 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
36494 AGAGGGAAAA
* *
36504 ATTTGGGTTTTTATATGAAATT
1 ATTTAGGTTTTTATAGGAAATT
36526 ATTTAGGTTTTTATAGGAAA
1 ATTTAGGTTTTTATAGGAAA
36546 AACCATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (22 bp):
ATTTAGGTTTTTATAGGAAATT
Found at i:42387 original size:43 final size:43
Alignment explanation
Indices: 42326--42408 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
42316 TTAGGAGGAA
42326 AAATGCCACTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCAC
1 AAATGCCACTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCAC
*
42369 AAATGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCC
1 AAATGCCACTAAAGAACATGGTCTTTAGCGGCGCTTTTCC
42409 NNNNCCATGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (43 bp):
AAATGCCACTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCAC
Found at i:42436 original size:72 final size:68
Alignment explanation
Indices: 42342--42481 Score: 190
Period size: 72 Copynumber: 2.0 Consensus size: 68
42332 CACTAAAGAA
* * * *
42342 CATGGTCTTTAGCGGCGCTTTTCCCACAAATGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTT
1 CATGGTCTTTAGCGGCACTTTTCCAACAAACGCCGCTAAAAAACATGGTCTTTAGCGGCGCTTTT
42407 CCNNNNC
66 CC----C
* *
42414 CATGTTCTTTAGCGGCACTTTTCCAACAAACGCCGCTAAAAAATATGGTCTTTAGCGGCGCTTTT
1 CATGGTCTTTAGCGGCACTTTTCCAACAAACGCCGCTAAAAAACATGGTCTTTAGCGGCGCTTTT
42479 CCC
66 CCC
42482 GCAAACGCCG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
68 1 0.02
72 61 0.98
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.29
Consensus pattern (68 bp):
CATGGTCTTTAGCGGCACTTTTCCAACAAACGCCGCTAAAAAACATGGTCTTTAGCGGCGCTTTT
CCC
Found at i:42480 original size:43 final size:43
Alignment explanation
Indices: 42414--42624 Score: 287
Period size: 43 Copynumber: 4.9 Consensus size: 43
42404 TTTCCNNNNC
* * * * *
42414 CATGTTCTTTAGCGGCACTTTTCCAACAAACGCCGCTAAAAAA
1 CATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAG
* *
42457 TATGGTCTTTAGCGGCGCTTTTCCCGCAAACGCCGCTAAAGAG
1 CATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAG
42500 CATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAG
1 CATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAG
* * *
42543 CATGGTCTTTAACGGCGCTTTTCCCATAAACGTCGCTAAAGAG
1 CATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAG
* ** * *
42586 CATGGTCTTTAGCGACATTTTTCTCACAAACGCCACTAA
1 CATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
42625 TATTAACAAA
Statistics
Matches: 148, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 148 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (43 bp):
CATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAG
Found at i:45083 original size:22 final size:23
Alignment explanation
Indices: 45057--45102 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
45047 TTAAAACGCT
*
45057 GCATTAGTAGAATAT-CAAAGCA
1 GCATTAGTAAAATATCCAAAGCA
45079 GCATTAGTAAAATATCCAAAGCA
1 GCATTAGTAAAATATCCAAAGCA
45102 G
1 G
45103 GCACATCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (23 bp):
GCATTAGTAAAATATCCAAAGCA
Found at i:45775 original size:19 final size:18
Alignment explanation
Indices: 45753--45794 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
45743 TTTATATAAG
*
45753 TTTTAAAATTTTGGAATTT
1 TTTTAAAATTTT-AAATTT
*
45772 TTTTTAAATTTTAAATTT
1 TTTTAAAATTTTAAATTT
45790 TTTTA
1 TTTTA
45795 GTTTATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (18 bp):
TTTTAAAATTTTAAATTT
Found at i:45809 original size:26 final size:26
Alignment explanation
Indices: 45733--45812 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
45723 AAATTAATTT
45733 ATTTTTTTAGTTTATATAAGTTTTAAA
1 ATTTTTTTAGTTTATATAAGTTTT-AA
*** * * * *
45760 ATTTTGGAATTTTTTTTAAATTTTAA
1 ATTTTTTTAGTTTATATAAGTTTTAA
45786 ATTTTTTTAGTTTATATAAGTTTTAA
1 ATTTTTTTAGTTTATATAAGTTTTAA
45812 A
1 A
45813 ATAATTGTTA
Statistics
Matches: 39, Mismatches: 14, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
26 22 0.56
27 17 0.44
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (26 bp):
ATTTTTTTAGTTTATATAAGTTTTAA
Found at i:45814 original size:27 final size:27
Alignment explanation
Indices: 45733--45814 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 27
45723 AAATTAATTT
45733 ATTTTTTTAGTTTATATAAGTTTTAAA
1 ATTTTTTTAGTTTATATAAGTTTTAAA
*** * * * *
45760 ATTTTGGAATTTTTTTTAAATTTT-AA
1 ATTTTTTTAGTTTATATAAGTTTTAAA
45786 ATTTTTTTAGTTTATATAAGTTTTAAA
1 ATTTTTTTAGTTTATATAAGTTTTAAA
45813 AT
1 AT
45815 AATTGTTAAT
Statistics
Matches: 40, Mismatches: 14, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
26 19 0.47
27 21 0.52
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (27 bp):
ATTTTTTTAGTTTATATAAGTTTTAAA
Found at i:45967 original size:41 final size:41
Alignment explanation
Indices: 45915--46083 Score: 223
Period size: 41 Copynumber: 4.1 Consensus size: 41
45905 CAGTTAATTT
* * *
45915 TCTGACCTTTAGCGGCGCTT-CCTCATAAGCGTCGCTAATGC
1 TCTGACCTTTAGCGGCGCTTACC-CATAAGTGCCGCTATTGC
*
45956 TCTAACCTTTAGCGGCGCTTACCCATAAGTGCCGCTATTGC
1 TCTGACCTTTAGCGGCGCTTACCCATAAGTGCCGCTATTGC
*
45997 TCTGACCTTTAGCGGCGCTTGCCCATAAGTGCCGCTATTGC
1 TCTGACCTTTAGCGGCGCTTACCCATAAGTGCCGCTATTGC
* ** * **
46038 TCTGACCTTTATCAACGCTTGCCCATAAGCACCGCTATTGC
1 TCTGACCTTTAGCGGCGCTTACCCATAAGTGCCGCTATTGC
46079 TCTGA
1 TCTGA
46084 TAAAGCGCCG
Statistics
Matches: 116, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
41 114 0.98
42 2 0.02
ACGTcount: A:0.18, C:0.32, G:0.20, T:0.30
Consensus pattern (41 bp):
TCTGACCTTTAGCGGCGCTTACCCATAAGTGCCGCTATTGC
Found at i:46089 original size:22 final size:22
Alignment explanation
Indices: 46064--46105 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
46054 GCTTGCCCAT
46064 AAGCACCGCTATTGCTCTGATA
1 AAGCACCGCTATTGCTCTGATA
*
46086 AAGCGCCGCTATTGCTCTGA
1 AAGCACCGCTATTGCTCTGA
46106 CCTTTAGCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (22 bp):
AAGCACCGCTATTGCTCTGATA
Found at i:46126 original size:63 final size:63
Alignment explanation
Indices: 46027--46146 Score: 195
Period size: 63 Copynumber: 1.9 Consensus size: 63
46017 GCCCATAAGT
* *
46027 GCCGCTATTGCTCTGACCTTTATCAACGCTTGCCCATAAGCACCGCTATTGCTCTGATAAAGC
1 GCCGCTATTGCTCTGACCTTTAGCAACGCTTGCCCATAAGCACCACTATTGCTCTGATAAAGC
* * *
46090 GCCGCTATTGCTCTGACCTTTAGCGATGCTTGCCCATAAGCGCCACTATTGCTCTGA
1 GCCGCTATTGCTCTGACCTTTAGCAACGCTTGCCCATAAGCACCACTATTGCTCTGA
46147 CCTTTAGCGG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.20, C:0.32, G:0.19, T:0.29
Consensus pattern (63 bp):
GCCGCTATTGCTCTGACCTTTAGCAACGCTTGCCCATAAGCACCACTATTGCTCTGATAAAGC
Found at i:46143 original size:41 final size:41
Alignment explanation
Indices: 46086--46273 Score: 254
Period size: 41 Copynumber: 4.6 Consensus size: 41
46076 TGCTCTGATA
* **
46086 AAGCGCCGCTATTGCTCTGACCTTTAGCGATGCTTGCCCAT
1 AAGCGCCGCTATTGCTCTAACCTTTAGCGGCGCTTGCCCAT
* *
46127 AAGCGCCACTATTGCTCTGACCTTTAGCGGCGCTTGCCCAT
1 AAGCGCCGCTATTGCTCTAACCTTTAGCGGCGCTTGCCCAT
* * * *
46168 AAGCGCCACTATTGCTCTAACTTTTAAG-GGCGTTTTCCCAT
1 AAGCGCCGCTATTGCTCTAACCTTT-AGCGGCGCTTGCCCAT
* *
46209 AAGCGCCGCTATTGCCCTAACCTTTAGCGGCGCTTTCCCAT
1 AAGCGCCGCTATTGCTCTAACCTTTAGCGGCGCTTGCCCAT
46250 AAGCGCCGCTATTGCTCT-ACCTTT
1 AAGCGCCGCTATTGCTCTAACCTTT
46274 TACGGCGTTT
Statistics
Matches: 133, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
40 8 0.06
41 123 0.92
42 2 0.02
ACGTcount: A:0.18, C:0.32, G:0.20, T:0.30
Consensus pattern (41 bp):
AAGCGCCGCTATTGCTCTAACCTTTAGCGGCGCTTGCCCAT
Found at i:46166 original size:104 final size:104
Alignment explanation
Indices: 45986--46185 Score: 319
Period size: 104 Copynumber: 1.9 Consensus size: 104
45976 ACCCATAAGT
* * * *
45986 GCCGCTATTGCTCTGACCTTTAGCGGCGCTTGCCCATAAGTGCCGCTATTGCTCTGACCTTTATC
1 GCCGCTATTGCTCTGACCTTTAGCGACGCTTGCCCATAAGCGCCACTATTGCTCTGACCTTTAGC
*
46051 AACGCTTGCCCATAAGCACCGCTATTGCTCTGATAAAGC
66 AACGCTTGCCCATAAGCACCACTATTGCTCTGATAAAGC
*
46090 GCCGCTATTGCTCTGACCTTTAGCGATGCTTGCCCATAAGCGCCACTATTGCTCTGACCTTTAGC
1 GCCGCTATTGCTCTGACCTTTAGCGACGCTTGCCCATAAGCGCCACTATTGCTCTGACCTTTAGC
** *
46155 GGCGCTTGCCCATAAGCGCCACTATTGCTCT
66 AACGCTTGCCCATAAGCACCACTATTGCTCT
46186 AACTTTTAAG
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
104 87 1.00
ACGTcount: A:0.18, C:0.33, G:0.20, T:0.29
Consensus pattern (104 bp):
GCCGCTATTGCTCTGACCTTTAGCGACGCTTGCCCATAAGCGCCACTATTGCTCTGACCTTTAGC
AACGCTTGCCCATAAGCACCACTATTGCTCTGATAAAGC
Found at i:46208 original size:145 final size:145
Alignment explanation
Indices: 45941--46223 Score: 395
Period size: 145 Copynumber: 2.0 Consensus size: 145
45931 GCTTCCTCAT
* * * *
45941 AAGCGTCGCTAATGCTCTAACCTTTAGCGGCGCTTACCCATAAGTGCCGCTATTGCTCTGACCTT
1 AAGCGCCGCTAATGCTCTAACCTTTAGCGACGCTTACCCATAAGCGCCACTATTGCTCTGACCTT
* * * *
46006 TAGCGGCGCTTGCCCATAAGTGCCGCTATTGCTCTGACCTTTATCAACGCTTGCCCATAAGCACC
66 TAGCGGCGCTTGCCCATAAGCGCCACTATTGCTCTAACCTTTAACAACGCTTGCCCATAAGCACC
46071 GCTATTGCTCTGATA
131 GCTATTGCTCTGATA
* * * *
46086 AAGCGCCGCTATTGCTCTGACCTTTAGCGATGCTTGCCCATAAGCGCCACTATTGCTCTGACCTT
1 AAGCGCCGCTAATGCTCTAACCTTTAGCGACGCTTACCCATAAGCGCCACTATTGCTCTGACCTT
* *** * * *
46151 TAGCGGCGCTTGCCCATAAGCGCCACTATTGCTCTAACTTTTAAGGGCGTTTTCCCATAAGCGCC
66 TAGCGGCGCTTGCCCATAAGCGCCACTATTGCTCTAACCTTTAACAACGCTTGCCCATAAGCACC
46216 GCTATTGC
131 GCTATTGC
46224 CCTAACCTTT
Statistics
Matches: 119, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
145 119 1.00
ACGTcount: A:0.19, C:0.31, G:0.20, T:0.29
Consensus pattern (145 bp):
AAGCGCCGCTAATGCTCTAACCTTTAGCGACGCTTACCCATAAGCGCCACTATTGCTCTGACCTT
TAGCGGCGCTTGCCCATAAGCGCCACTATTGCTCTAACCTTTAACAACGCTTGCCCATAAGCACC
GCTATTGCTCTGATA
Found at i:46234 original size:186 final size:186
Alignment explanation
Indices: 45915--46267 Score: 485
Period size: 186 Copynumber: 1.9 Consensus size: 186
45905 CAGTTAATTT
* * *
45915 TCTGACCTTTAGCGGCGCTTCCTCATAAGCGTCGCTAATGCTCTAACCTTTAGCGGCGCTTACCC
1 TCTGACCTTTAGCGACGCTTCCTCATAAGCGCCACTAATGCTCTAACCTTTAGCGGCGCTTACCC
* * * * * *
45980 ATAAGTGCCGCTATTGCTCTGACCTTTAGCGGCGCTTGCCCATAAGTGCCGCTATTGCTCTGACC
66 ATAAGCGCCACTATTGCTCTAACCTTTAGCGGCGCTTGCCCATAAGCGCCGCTATTGCCCTAACC
*
46045 TTTATCAACGCTTGCCCATAAGCACCGCTATTGCTCTGATAAAGCGCCGCTATTGC
131 TTTAGCAACGCTTGCCCATAAGCACCGCTATTGCTCTGATAAAGCGCCGCTATTGC
* * * *
46101 TCTGACCTTTAGCGATGCTTGCC-CATAAGCGCCACTATTGCTCTGACCTTTAGCGGCGCTTGCC
1 TCTGACCTTTAGCGACGCTT-CCTCATAAGCGCCACTAATGCTCTAACCTTTAGCGGCGCTTACC
* * *
46165 CATAAGCGCCACTATTGCTCTAACTTTTAAG-GGCGTTTTCCCATAAGCGCCGCTATTGCCCTAA
65 CATAAGCGCCACTATTGCTCTAACCTTT-AGCGGCGCTTGCCCATAAGCGCCGCTATTGCCCTAA
** * *
46229 CCTTTAGCGGCGCTTTCCCATAAGCGCCGCTATTGCTCT
129 CCTTTAGCAACGCTTGCCCATAAGCACCGCTATTGCTCT
46268 ACCTTTTACG
Statistics
Matches: 144, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
186 140 0.97
187 4 0.03
ACGTcount: A:0.18, C:0.32, G:0.20, T:0.29
Consensus pattern (186 bp):
TCTGACCTTTAGCGACGCTTCCTCATAAGCGCCACTAATGCTCTAACCTTTAGCGGCGCTTACCC
ATAAGCGCCACTATTGCTCTAACCTTTAGCGGCGCTTGCCCATAAGCGCCGCTATTGCCCTAACC
TTTAGCAACGCTTGCCCATAAGCACCGCTATTGCTCTGATAAAGCGCCGCTATTGC
Found at i:46298 original size:40 final size:40
Alignment explanation
Indices: 46253--46363 Score: 150
Period size: 40 Copynumber: 2.8 Consensus size: 40
46243 TTCCCATAAG
* *
46253 CGCCGCTATTGCTCTACCTTTTACGGCGTTTATGTAAAAA
1 CGCCGCTATTGCTTTACCTTTTACGGCATTTATGTAAAAA
* * * *
46293 TGCCGCTATTGTTTTACCTTTTGCGGCATTTATGTAAATA
1 CGCCGCTATTGCTTTACCTTTTACGGCATTTATGTAAAAA
* *
46333 CGTCGCTATTGCTTTACCTTTTACGGTATTT
1 CGCCGCTATTGCTTTACCTTTTACGGCATTT
46364 TCTGTCCAAA
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (40 bp):
CGCCGCTATTGCTTTACCTTTTACGGCATTTATGTAAAAA
Found at i:47557 original size:25 final size:26
Alignment explanation
Indices: 47529--47583 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
47519 AAAATACTTA
47529 AAATAACCT-AAAAT-TAAAAATAAAT
1 AAATAA-CTAAAAATATAAAAATAAAT
* *
47554 AAAT-ACTAAAAATATAAAACTTAAT
1 AAATAACTAAAAATATAAAAATAAAT
47579 AAATA
1 AAATA
47584 TAATAGCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 2 0.08
24 6 0.24
25 17 0.68
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.25
Consensus pattern (26 bp):
AAATAACTAAAAATATAAAAATAAAT
Found at i:47563 original size:17 final size:17
Alignment explanation
Indices: 47515--47567 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
47505 CTCTTAAACA
*
47515 AAATAAAATACTTAAAAT
1 AAAT-AAATACTAAAAAT
* *
47533 AACCTAAA-ATTAAAAAT
1 AA-ATAAATACTAAAAAT
47550 AAATAAATACTAAAAAT
1 AAATAAATACTAAAAAT
47567 A
1 A
47568 TAAAACTTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
16 4 0.14
17 18 0.64
18 5 0.18
19 1 0.04
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.25
Consensus pattern (17 bp):
AAATAAATACTAAAAAT
Found at i:47956 original size:163 final size:163
Alignment explanation
Indices: 47680--48006 Score: 618
Period size: 163 Copynumber: 2.0 Consensus size: 163
47670 CGTAATAATA
* *
47680 CTGTGTGGGAATTTCGCTCGATAGTCTTCACTAAAATGATCATAACTTTAGCTCATGAACTTGAA
1 CTGTGCGGGAATTTCGCTCGATAGTCTTCACTAAAATGATCATAACTTTAGATCATGAACTTGAA
47745 ATCAGGTGATTCAAAGTACGTTTTGAAGCTAAGAGATAGTTCTTTCGTCGATTCAAAGACATCTC
66 ATCAGGTGATTCAAAGTACGTTTTGAAGCTAAGAGATAGTTCTTTCGTCGATTCAAAGACATCTC
47810 GACCTAGAAATGTATGGATCCCATCTAAAAATG
131 GACCTAGAAATGTATGGATCCCATCTAAAAATG
* *
47843 CTGTGCGGGAATTTTGCTCGATAGTCTTCACTAAAATGGTCATAACTTTAGATCATGAACTTGAA
1 CTGTGCGGGAATTTCGCTCGATAGTCTTCACTAAAATGATCATAACTTTAGATCATGAACTTGAA
47908 ATCAGGTGATTCAAAGTACGTTTTGAAGCTAAGAGATAGTTCTTTCGTCGATTCAAAGACATCTC
66 ATCAGGTGATTCAAAGTACGTTTTGAAGCTAAGAGATAGTTCTTTCGTCGATTCAAAGACATCTC
47973 GACCTAGAAATGTATGGATCCCATCTAAAAATG
131 GACCTAGAAATGTATGGATCCCATCTAAAAATG
48006 C
1 C
48007 ACCACAATTC
Statistics
Matches: 160, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
163 160 1.00
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (163 bp):
CTGTGCGGGAATTTCGCTCGATAGTCTTCACTAAAATGATCATAACTTTAGATCATGAACTTGAA
ATCAGGTGATTCAAAGTACGTTTTGAAGCTAAGAGATAGTTCTTTCGTCGATTCAAAGACATCTC
GACCTAGAAATGTATGGATCCCATCTAAAAATG
Found at i:48855 original size:111 final size:111
Alignment explanation
Indices: 48661--48883 Score: 437
Period size: 111 Copynumber: 2.0 Consensus size: 111
48651 CTACATTATT
48661 TTGTGATTTCTTTTTACATAGTTTTAATTTTAAACTTCCCTAATTTTTTTATTTTACTTGTTTTT
1 TTGTGATTTCTTTTTACATAGTTTTAATTTTAAACTTCCCTAATTTTTTTATTTTACTTGTTTTT
*
48726 ACTAAAGAAATAAAATTATCACTAGTCTATGTGAGTTCGACCCTTC
66 ACTAAAGAAATAAAATTATCACTAGTATATGTGAGTTCGACCCTTC
48772 TTGTGATTTCTTTTTACATAGTTTTAATTTTAAACTTCCCTAATTTTTTTATTTTACTTGTTTTT
1 TTGTGATTTCTTTTTACATAGTTTTAATTTTAAACTTCCCTAATTTTTTTATTTTACTTGTTTTT
48837 ACTAAAGAAATAAAATTATCACTAGTATATGTGAGTTCGACCCTTC
66 ACTAAAGAAATAAAATTATCACTAGTATATGTGAGTTCGACCCTTC
48883 T
1 T
48884 CATTTCTATC
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.27, C:0.14, G:0.09, T:0.50
Consensus pattern (111 bp):
TTGTGATTTCTTTTTACATAGTTTTAATTTTAAACTTCCCTAATTTTTTTATTTTACTTGTTTTT
ACTAAAGAAATAAAATTATCACTAGTATATGTGAGTTCGACCCTTC
Found at i:55140 original size:23 final size:22
Alignment explanation
Indices: 55113--55162 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
55103 GAATACAATT
*
55113 AATAACAATTACTAACACAATAA
1 AATAACAAATACTAACA-AATAA
* * *
55136 AATAATAAATATTAATAAATAA
1 AATAACAAATACTAACAAATAA
55158 AATAA
1 AATAA
55163 TAATATAATC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (22 bp):
AATAACAAATACTAACAAATAA
Found at i:55170 original size:17 final size:17
Alignment explanation
Indices: 55142--55183 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
55132 ATAAAATAAT
*
55142 AAATATTAATA-AAT-A
1 AAATAATAATATAATCA
55157 AAATAATAATATAATCA
1 AAATAATAATATAATCA
*
55174 TAATAATAAT
1 AAATAATAAT
55184 GACAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 3 0.13
17 10 0.43
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATAATAATATAATCA
Found at i:55592 original size:17 final size:17
Alignment explanation
Indices: 55570--55603 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
55560 ATAAATGATC
55570 AAATTGTAAGTGCGAAT
1 AAATTGTAAGTGCGAAT
**
55587 AAATTGTTGGTGCGAAT
1 AAATTGTAAGTGCGAAT
55604 TAAAAATAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (17 bp):
AAATTGTAAGTGCGAAT
Done.