Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006151.1 Kokia drynarioides strain JFW-HI SEQ_120692, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6163
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31


Found at i:5680 original size:3 final size:3

Alignment explanation


    Indices: 5672--5700  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

       5662 GATATTGAAT

                                                  
       5672 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA

       5701 AGGGATGATC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00


Consensus pattern (3 bp):   
AAG

Done.