Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006152.1 Kokia drynarioides strain JFW-HI SEQ_120697, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5369
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:826 original size:8 final size:9

Alignment explanation


    Indices: 804--828  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        794 ATATGTTGAA

                     
        804 TAAAAAGTG
          1 TAAAAAGTG

                     
        813 TAAAAAGTG
          1 TAAAAAGTG

                   
        822 TAAAAAG
          1 TAAAAAG

        829 GTGCTTTTTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20


Consensus pattern (9 bp):   
TAAAAAGTG
Done.