Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006163.1 Kokia drynarioides strain JFW-HI SEQ_120718, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1035
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36


Found at i:437 original size:7 final size:7

Alignment explanation


    Indices: 425--459  Score: 61
    Period size: 7  Copynumber: 5.0  Consensus size: 7

        415 GTGAATGAAT

                   
        425 AGTGAGA
          1 AGTGAGA

                   
        432 AGTGAGA
          1 AGTGAGA

                   
        439 AGTGAGA
          1 AGTGAGA

                   
        446 AGTGAGA
          1 AGTGAGA

             *     
        453 AATGAGA
          1 AGTGAGA

        460 TGGGAAAACA


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   7   27  1.00

ACGTcount: A:0.46, C:0.00, G:0.40, T:0.14


Consensus pattern (7 bp):   
AGTGAGA

Found at i:964 original size:20 final size:19

Alignment explanation


    Indices: 931--974  Score: 54
    Period size: 20  Copynumber: 2.3  Consensus size: 19

        921 TGTTTCTAAA

                                
        931 TTTATATATATTTTTAAGTT
          1 TTTATATATATTTTTAA-TT

                            *   
        951 TTTATATACT-TTTTTTATT
          1 TTTATATA-TATTTTTAATT

                 
        970 TTTAT
          1 TTTAT

        975 TTTTTCAATG


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  19    7  0.32
  20   14  0.64
  21    1  0.05

ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70


Consensus pattern (19 bp):   
TTTATATATATTTTTAATT
Done.