Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006165.1 Kokia drynarioides strain JFW-HI SEQ_120722, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2495
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32


Found at i:468 original size:52 final size:52

Alignment explanation


    Indices: 384--629  Score: 395
    Period size: 52  Copynumber: 4.7  Consensus size: 52

        374 TTCACTTAAA

                                *   *  *                    *    
        384 TCATATACTCACGATGACACATAGCCACCGGACCT-TATAATCCGTAAGGGAT
          1 TCATATACTCACGATGACACTTAGTCATCGGACCTCT-TAATCCGTAAAGGAT

                                                       *        
        436 TCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCATAAAGGAT
          1 TCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCGTAAAGGAT

                      *                  *                      
        488 TCATATACTCGCGATGACACTTAGTCATCCGACCTCTTAATCCGTAAAGGAT
          1 TCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCGTAAAGGAT

                                                      *         
        540 TCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCTGTAAAGGAT
          1 TCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCGTAAAGGAT

                        *                         
        592 TCATATACTCACAATGACACTTAGTCATCGGACCTCTT
          1 TCATATACTCACGATGACACTTAGTCATCGGACCTCTT

        630 CGTTTATGGC


Statistics
Matches: 181,  Mismatches: 12, Indels: 2
        0.93            0.06        0.01

Matches are distributed among these distances:
  52  180  0.99
  53    1  0.01

ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28


Consensus pattern (52 bp):   
TCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCGTAAAGGAT

Done.