Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006168.1 Kokia drynarioides strain JFW-HI SEQ_120728, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1167
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38


Found at i:140 original size:18 final size:18

Alignment explanation


    Indices: 117--152  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        107 CCATGTCAAC

                              
        117 AAAAAAAAAAACATTTAA
          1 AAAAAAAAAAACATTTAA

                    *  *      
        135 AAAAAAAAGAATATTTAA
          1 AAAAAAAAAAACATTTAA

        153 TTTTTTACTA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19


Consensus pattern (18 bp):   
AAAAAAAAAAACATTTAA

Found at i:303 original size:21 final size:22

Alignment explanation


    Indices: 261--303  Score: 61
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        251 GAAATATTAT

                   *         *    
        261 TAAAATTTATAAAAATATTAAA
          1 TAAAATTCATAAAAATAATAAA

                                  
        283 TAAAATTCA-AAAAATAATAAA
          1 TAAAATTCATAAAAATAATAAA

        304 AATCATTAAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21   11  0.58
  22    8  0.42

ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30


Consensus pattern (22 bp):   
TAAAATTCATAAAAATAATAAA
Done.