Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006169.1 Kokia drynarioides strain JFW-HI SEQ_120729, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3454
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33


Found at i:1011 original size:13 final size:13

Alignment explanation


    Indices: 993--1017  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        983 GAAAAAATTC

                         
        993 ATATATGAAAAAA
          1 ATATATGAAAAAA

                        
       1006 ATATATGAAAAA
          1 ATATATGAAAAA

       1018 TAAAGAGGAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24


Consensus pattern (13 bp):   
ATATATGAAAAAA
Done.