Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006173.1 Kokia drynarioides strain JFW-HI SEQ_120737, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6985
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:2968 original size:6 final size:6

Alignment explanation


    Indices: 2947--2981  Score: 54
    Period size: 6  Copynumber: 6.0  Consensus size: 6

       2937 TTATTTAATT

                       *                             
       2947 ATCTCA AT-TAA ATCTCA ATCTCA ATCTCA ATCTCA
          1 ATCTCA ATCTCA ATCTCA ATCTCA ATCTCA ATCTCA

       2982 TAATATTTCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
   5    4  0.15
   6   22  0.85

ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34


Consensus pattern (6 bp):   
ATCTCA

Done.