genome.fa.s6174.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01006174.1 Kokia drynarioides strain JFW-HI SEQ_120738, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204875

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11316--11357	16	2.7	15	73	20	50	47	0	4	47	1.23
14066--14159	47	2.0	47	100	0	188	29	27	12	29	1.93
28829--28902	29	2.6	29	78	6	78	39	2	6	51	1.43
40403--40481	27	3.1	27	62	20	71	39	1	17	41	1.58
40399--40498	48	2.1	48	100	0	200	38	3	16	43	1.63
40399--40514	48	2.4	46	90	8	146	37	3	14	43	1.63
41558--41597	16	2.5	16	87	0	53	22	12	12	52	1.72
49094--49190	51	1.9	51	89	0	149	46	9	6	38	1.61
49151--49203	27	2.0	26	89	10	81	49	9	3	37	1.53
67897--67948	20	2.5	21	82	14	63	42	0	1	55	1.10
76173--76231	30	2.0	30	93	0	100	45	23	6	23	1.76
76323--76391	30	2.3	31	87	7	97	55	17	7	20	1.65
77320--77386	30	2.2	31	86	7	93	19	13	17	49	1.80
80163--80188	8	3.2	8	100	0	52	50	11	11	26	1.73
85789--85877	47	1.9	47	86	6	128	50	8	3	37	1.51
85987--86011	12	2.1	12	100	0	50	28	8	0	64	1.22
86548--86667	59	2.0	61	95	3	217	43	8	2	45	1.47
87658--87727	18	3.9	18	71	17	74	61	10	4	24	1.45
87658--87735	17	4.5	17	72	16	70	64	8	3	23	1.39
87669--87734	35	1.9	34	82	14	82	63	10	3	22	1.40
90546--90578	16	1.9	18	88	11	52	66	3	12	18	1.36
90680--90734	27	2.2	24	80	9	56	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91275--91390	61	1.9	61	85	0	160	30	20	8	40	1.82
94996--95051	23	2.4	23	82	5	69	42	0	7	50	1.30
107150--107211	20	3.3	20	66	25	62	17	9	17	54	1.69
107146--107219	36	2.1	36	100	0	148	20	10	18	50	1.77
111894--112013	59	2.0	59	93	0	204	25	20	30	24	1.98
113196--113246	25	2.0	26	88	3	77	35	0	0	64	0.94
115469--115494	13	2.0	13	100	0	52	92	7	0	0	0.39
126618--126697	32	2.6	31	81	11	85	46	6	7	40	1.57
127461--127487	6	4.5	6	100	0	54	33	51	14	0	1.43
128379--128421	18	2.4	18	80	7	52	46	2	0	51	1.13
134750--134782	16	2.1	16	88	11	50	57	0	0	42	0.98
135088--135134	22	2.1	22	84	7	60	36	0	0	63	0.94
135098--135142	23	2.0	23	82	8	56	37	0	0	62	0.96
143949--144060	31	3.6	30	76	7	100	41	7	8	42	1.61
144012--144070	31	1.9	31	89	3	93	40	13	8	37	1.75
145139--145176	20	1.9	20	88	0	58	31	7	15	44	1.75
147401--147447	23	2.1	21	88	7	67	59	0	0	40	0.97
148943--148974	2	16.0	2	100	0	64	50	0	0	50	1.00
153548--153576	6	5.0	6	95	4	51	0	0	13	86	0.58
167277--167319	23	1.9	23	85	4	61	41	2	2	53	1.26
167270--167325	23	2.5	23	79	2	60	44	3	1	50	1.29
169224--169265	18	2.3	19	91	4	68	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177724--177784	31	2.0	31	83	0	77	49	13	3	34	1.58
184870--184917	2	24.5	2	87	12	73	47	0	2	50	1.12
184869--184986	26	4.6	25	69	10	78	41	0	3	54	1.23
198627--198652	2	13.0	2	100	0	52	0	0	50	50	1.00
200404--200442	3	13.0	3	86	0	51	25	66	5	2	1.25
200404--200442	12	3.2	12	88	0	60	25	66	5	2	1.25
204751--204784	6	5.7	6	100	0	68	0	52	0	47	1.00

Tables:   1

The End!