Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006178.1 Kokia drynarioides strain JFW-HI SEQ_120743, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10661
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:4693 original size:26 final size:26

Alignment explanation


    Indices: 4664--4717  Score: 72
    Period size: 26  Copynumber: 2.1  Consensus size: 26

       4654 TTAGATAACA

                     **         *     
       4664 TTGAATTTTGGAATATTTTTTATTTT
          1 TTGAATTTTAAAATATTTTTAATTTT

                          *           
       4690 TTGAATTTTAAAATGTTTTTAATTTT
          1 TTGAATTTTAAAATATTTTTAATTTT

              
       4716 TT
          1 TT

       4718 TCATAATTTT


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65


Consensus pattern (26 bp):   
TTGAATTTTAAAATATTTTTAATTTT
Done.