genome.fa.s6179.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01006179.1 Kokia drynarioides strain JFW-HI SEQ_120744, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22936

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578--607	16	1.9	16	93	6	53	16	13	0	70	1.18
573--633	22	2.8	22	87	7	72	14	11	1	72	1.20
587--633	21	2.2	22	92	3	78	14	8	2	74	1.15
940--982	21	2.0	22	81	4	52	23	20	18	37	1.94
3940--3975	13	2.8	13	82	0	54	44	19	19	16	1.87
6428--6494	30	2.2	31	84	7	93	40	8	25	25	1.84
6499--6947	29	15.3	29	73	12	285	35	3	24	36	1.72
6553--6974	59	7.2	56	73	13	253	35	2	23	38	1.69
6556--6974	88	4.7	87	71	13	281	35	2	24	38	1.69
6556--6974	30	14.2	29	73	16	199	35	2	24	38	1.69
7620--7656	16	2.2	17	90	4	58	10	10	0	78	0.97
8807--8892	17	5.1	17	79	8	95	55	3	1	39	1.24
8814--8867	11	4.8	11	75	4	54	57	1	1	38	1.20
8809--8892	34	2.5	33	86	7	116	55	3	1	39	1.25
9252--10271	209	4.9	208	86	2	1267	23	22	17	36	1.95
9297--10273	419	2.3	417	86	2	1327	23	22	17	36	1.95
10373--10543	39	4.4	39	76	11	152	26	16	30	26	1.96
10400--10543	78	1.8	78	80	5	175	25	18	30	25	1.98
10533--10628	41	2.3	42	87	5	142	32	14	22	30	1.94
10784--11102	49	6.5	49	73	8	238	20	28	15	35	1.93
10787--11073	50	5.8	50	73	2	240	20	28	15	35	1.93
10812--11090	98	2.8	99	85	1	391	21	29	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10783--11137	148	2.4	147	79	3	347	20	28	14	35	1.93
10783--11215	147	2.9	147	78	4	363	20	28	15	35	1.93
12175--12206	15	2.0	17	88	11	50	0	31	0	68	0.90
12188--12229	22	1.9	22	85	9	59	0	16	7	76	1.00
18223--18292	30	2.4	29	79	6	79	32	12	28	25	1.93
18300--18678	29	13.1	28	72	14	166	34	3	26	35	1.73
18318--18771	58	7.8	57	75	12	227	35	3	25	36	1.72
18300--18770	30	16.1	30	73	14	262	34	3	25	36	1.72
18388--18678	88	3.3	87	75	12	215	33	2	27	36	1.70
19420--19457	9	4.3	9	83	16	53	13	10	0	76	1.02
19421--19457	16	2.2	17	95	4	67	13	10	0	75	1.04
20614--20671	6	9.8	6	76	14	50	56	1	0	41	1.09
20615--20666	17	3.1	17	88	5	79	57	1	0	40	1.10
20616--20675	7	8.9	7	74	18	56	56	1	0	41	1.09
22912--22936	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!