Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006181.1 Kokia drynarioides strain JFW-HI SEQ_120747, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 822
Length: 1371
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Found at i:1371 original size:715 final size:715
Alignment explanation
Indices: 1--1371 Score: 2733
Period size: 715 Copynumber: 1.9 Consensus size: 715
1 ATAATAACTTACATAAGATTGAACAAACAATGAATTAGGGCATTTTTTTGGAGAATCTGACATTG
1 ATAATAACTTACATAAGATTGAACAAACAATGAATTAGGGCATTTTTTTGGAGAATCTGACATTG
66 GATAACTGATCTCACAAGTTTGAATCTGAAGTTAAGCCGTGGACTATTCGTCTTATAAGGGTTGT
66 GATAACTGATCTCACAAGTTTGAATCTGAAGTTAAGCCGTGGACTATTCGTCTTATAAGGGTTGT
131 TTCTTAACTGAAAGTCTCATTTTTGTTTCCTTATTTCATTGCATATTTTGACACCCATATTCCGG
131 TTCTTAACTGAAAGTCTCATTTTTGTTTCCTTATTTCATTGCATATTTTGACACCCATATTCCGG
196 GAAACTATATTTCTGTAGGCTACATGAAGAAGTAATGTTTAACATTCGATTCCCATATATGTTCT
196 GAAACTATATTTCTGTAGGCTACATGAAGAAGTAATGTTTAACATTCGATTCCCATATATGTTCT
261 GTATGACAGAAAATTCATGTATCCTAGAAGCATGAAGTTATTTTTATTCGAGGAGTTTATTCTCG
261 GTATGACAGAAAATTCATGTATCCTAGAAGCATGAAGTTATTTTTATTCGAGGAGTTTATTCTCG
326 TGATGTTGTAATGTAGGCATCTTTTTTGGTTCTGATCTCTCACCTTGGCAGTAGGTCATATATGT
326 TGATGTTGTAATGTAGGCATCTTTTTTGGTTCTGATCTCTCACCTTGGCAGTAGGTCATATATGT
391 TATATTTGCATGGAAACTATCATATTAATCATTCTACATTTCTCTTATTTAATGATTTCCATCTT
391 TATATTTGCATGGAAACTATCATATTAATCATTCTACATTTCTCTTATTTAATGATTTCCATCTT
456 CTTAATTTTGGGAATCTATTAGGAAGATAGGTGCTTGGATGGGATGGGCAGCTGCAGCACAGAGT
456 CTTAATTTTGGGAATCTATTAGGAAGATAGGTGCTTGGATGGGATGGGCAGCTGCAGCACAGAGT
521 ATTTAGTGGATAGCAAATACTAGTTTCTATAAGATTTACCTGGCTGAATTATGGCATCTGCAAGT
521 ATTTAGTGGATAGCAAATACTAGTTTCTATAAGATTTACCTGGCTGAATTATGGCATCTGCAAGT
586 CTAGGAAATGGAGGAGTGGGTAGTTCCAGGTCTGTTAATGGTTTCAAAAGTTCTTCTAGTTCTGT
586 CTAGGAAATGGAGGAGTGGGTAGTTCCAGGTCTGTTAATGGTTTCAAAAGTTCTTCTAGTTCTGT
651 TGATTGAACAAACAATGAATTAGGGCATTTTTTTGGAGAATCTGACATTGGATAACTGATCTCAC
651 TGATTGAACAAACAATGAATTAGGGCATTTTTTTGGAGAATCTGACATTGGATAACTGATCTCAC
716 ATAATAACTTACATAAGATTGAACAAACAATGAATTAGGGCATTTTTTTGGAGAATCTGACATTG
1 ATAATAACTTACATAAGATTGAACAAACAATGAATTAGGGCATTTTTTTGGAGAATCTGACATTG
781 GATAACTGATCTCACAAGTTTGAATCTGAAGTTAAGCCGTGGACTATTCGTCTTATAAGGGTTGT
66 GATAACTGATCTCACAAGTTTGAATCTGAAGTTAAGCCGTGGACTATTCGTCTTATAAGGGTTGT
846 TTCTTAACTGAAAGTCTCATTTTTGTTTCCTTATTTCATTGCATATTTTGACACCCATATTCCGG
131 TTCTTAACTGAAAGTCTCATTTTTGTTTCCTTATTTCATTGCATATTTTGACACCCATATTCCGG
911 GAAACTATATTTCTGTAGGCTACATGAAGAAGTAATGTTTAACATTCGATTCCCATATATGTTCT
196 GAAACTATATTTCTGTAGGCTACATGAAGAAGTAATGTTTAACATTCGATTCCCATATATGTTCT
976 GTATGACAGAAAATTCATGTATCCTAGAAGCATGAAGTTATTTTTATTCGAGGAGTTTATTCTCG
261 GTATGACAGAAAATTCATGTATCCTAGAAGCATGAAGTTATTTTTATTCGAGGAGTTTATTCTCG
*
1041 TGATGTTGTAATGTAGGCATCTTTTTTGGTTCTGATCTCTCACCTTGGCAGTAGGTCATATCTGT
326 TGATGTTGTAATGTAGGCATCTTTTTTGGTTCTGATCTCTCACCTTGGCAGTAGGTCATATATGT
1106 TATATTTGCATGGAAACTATCATATTAATCATTCTACATTTCTCTTATTTAATGATTTCCATCTT
391 TATATTTGCATGGAAACTATCATATTAATCATTCTACATTTCTCTTATTTAATGATTTCCATCTT
1171 CTTAATTTTGGGAATCTATTAGGAAGATAGGTGCTTGGATGGGATGGGCAGCTGCAGCACAGAGT
456 CTTAATTTTGGGAATCTATTAGGAAGATAGGTGCTTGGATGGGATGGGCAGCTGCAGCACAGAGT
1236 ATTTAGTGGATAGCAAATACTAGTTTCTATAAGATTTACCTGGCTGAATTATGGCATCTGCAAGT
521 ATTTAGTGGATAGCAAATACTAGTTTCTATAAGATTTACCTGGCTGAATTATGGCATCTGCAAGT
1301 CTAGGAAATGGAGGAGTGGGTAGTTCCAGGTCTGTTAATGGTTTCAAAAGTTCTTCTAGTTCTGT
586 CTAGGAAATGGAGGAGTGGGTAGTTCCAGGTCTGTTAATGGTTTCAAAAGTTCTTCTAGTTCTGT
1366 TGATTG
651 TGATTG
Statistics
Matches: 655, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
715 655 1.00
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (715 bp):
ATAATAACTTACATAAGATTGAACAAACAATGAATTAGGGCATTTTTTTGGAGAATCTGACATTG
GATAACTGATCTCACAAGTTTGAATCTGAAGTTAAGCCGTGGACTATTCGTCTTATAAGGGTTGT
TTCTTAACTGAAAGTCTCATTTTTGTTTCCTTATTTCATTGCATATTTTGACACCCATATTCCGG
GAAACTATATTTCTGTAGGCTACATGAAGAAGTAATGTTTAACATTCGATTCCCATATATGTTCT
GTATGACAGAAAATTCATGTATCCTAGAAGCATGAAGTTATTTTTATTCGAGGAGTTTATTCTCG
TGATGTTGTAATGTAGGCATCTTTTTTGGTTCTGATCTCTCACCTTGGCAGTAGGTCATATATGT
TATATTTGCATGGAAACTATCATATTAATCATTCTACATTTCTCTTATTTAATGATTTCCATCTT
CTTAATTTTGGGAATCTATTAGGAAGATAGGTGCTTGGATGGGATGGGCAGCTGCAGCACAGAGT
ATTTAGTGGATAGCAAATACTAGTTTCTATAAGATTTACCTGGCTGAATTATGGCATCTGCAAGT
CTAGGAAATGGAGGAGTGGGTAGTTCCAGGTCTGTTAATGGTTTCAAAAGTTCTTCTAGTTCTGT
TGATTGAACAAACAATGAATTAGGGCATTTTTTTGGAGAATCTGACATTGGATAACTGATCTCAC
Done.