Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006196.1 Kokia drynarioides strain JFW-HI SEQ_120765, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.35


Found at i:75 original size:41 final size:41

Alignment explanation


    Indices: 1--108  Score: 153
    Period size: 41  Copynumber: 2.6  Consensus size: 41

                *   *                         *      
          1 AGACGTGATTCTTCCTTTAATATAATCACATGCTCATCCCG
          1 AGACATGAGTCTTCCTTTAATATAATCACATGCTAATCCCG

                                    *  **        *   
         42 AGACATGAGTCTTCCTTTAATATACTCTTATGCTAATTCCG
          1 AGACATGAGTCTTCCTTTAATATAATCACATGCTAATCCCG

                                      
         83 AGACATGAGTCTTCCTTTAATATAAT
          1 AGACATGAGTCTTCCTTTAATATAAT

        109 ATCATACTCA


Statistics
Matches: 59,  Mismatches: 8, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  41   59  1.00

ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37


Consensus pattern (41 bp):   
AGACATGAGTCTTCCTTTAATATAATCACATGCTAATCCCG

Found at i:135 original size:41 final size:41

Alignment explanation


    Indices: 1--143  Score: 146
    Period size: 41  Copynumber: 3.5  Consensus size: 41

                *   *                              *  
          1 AGACGTGATTCTTCCTTTAATATAATCA-CATGCTCATCCCG
          1 AGACATGAGTCTTCCTTTAATATAAT-ATCATGCTCATCTCG

                                    * * *     *       
         42 AGACATGAGTCTTCCTTTAATATACTCTTATGCTAAT-TCCG
          1 AGACATGAGTCTTCCTTTAATATAATATCATGCTCATCT-CG

                                           *       * 
         83 AGACATGAGTCTTCCTTTAATATAATATCATACTCATCTAG
          1 AGACATGAGTCTTCCTTTAATATAATATCATGCTCATCTCG

             *    *             
        124 ACACATTAGTCTTCCATTTA
          1 AGACATGAGTCTTCC-TTTA

        144 TACATCAAGT


Statistics
Matches: 83,  Mismatches: 15, Indels: 7
        0.79            0.14        0.07

Matches are distributed among these distances:
  41   78  0.94
  42    5  0.06

ACGTcount: A:0.29, C:0.23, G:0.10, T:0.37


Consensus pattern (41 bp):   
AGACATGAGTCTTCCTTTAATATAATATCATGCTCATCTCG
Done.