Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006198.1 Kokia drynarioides strain JFW-HI SEQ_120768, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13383
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:4463 original size:32 final size:29

Alignment explanation


    Indices: 4419--4485  Score: 80
    Period size: 29  Copynumber: 2.2  Consensus size: 29

       4409 ACTTTCCTCA

                   *             *          
       4419 TTAATTTTTTTTATATTTTATTTTCTTAGTTT
          1 TTAATTTGTTTTA-ATTTTA-ATT-TTAGTTT

                         *               
       4451 TTAATTTGTTTTACTTTTAATTTTAGTTT
          1 TTAATTTGTTTTAATTTTAATTTTAGTTT

                  
       4480 TTAATT
          1 TTAATT

       4486 CTAAAACCTC


Statistics
Matches: 32,  Mismatches: 3, Indels: 3
        0.84            0.08        0.08

Matches are distributed among these distances:
  29   13  0.41
  30    2  0.06
  31    5  0.16
  32   12  0.38

ACGTcount: A:0.21, C:0.03, G:0.04, T:0.72


Consensus pattern (29 bp):   
TTAATTTGTTTTAATTTTAATTTTAGTTT
Done.