Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000620.1 Kokia drynarioides strain JFW-HI SEQ_111575, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2958
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38


Found at i:1146 original size:29 final size:27

Alignment explanation


    Indices: 1076--1147  Score: 74
    Period size: 29  Copynumber: 2.5  Consensus size: 27

       1066 TCTACTTGTT

                                       
       1076 TTATAAATTATATATTAGTCAAATTAA
          1 TTATAAATTATATATTAGTCAAATTAA

                     **                     
       1103 TTATATATAGAATATATTTATGT-AAATTTAA
          1 TTATA-A-ATTATATA-TTA-GTCAAA-TTAA

                          
       1134 TTATAAATTATATA
          1 TTATAAATTATATA

       1148 AAATATTAGT


Statistics
Matches: 36,  Mismatches: 4, Indels: 8
        0.75            0.08        0.17

Matches are distributed among these distances:
  27    5  0.14
  28    1  0.03
  29   12  0.33
  30    7  0.19
  31   11  0.31

ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47


Consensus pattern (27 bp):   
TTATAAATTATATATTAGTCAAATTAA
Done.