genome.fa.s6207.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01006207.1 Kokia drynarioides strain JFW-HI SEQ_120777, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  236596

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54--116	31	2.1	30	90	3	99	55	7	9	26	1.59
592--644	27	2.0	27	100	0	106	20	7	30	41	1.80
16926--16964	20	2.0	20	84	0	51	30	20	23	25	1.98
17230--17288	29	2.0	30	87	12	88	47	15	1	35	1.55
17770--17819	25	2.0	24	84	3	64	66	4	2	28	1.21
18573--18617	22	2.0	22	82	4	54	44	8	2	44	1.47
21905--21938	16	2.0	18	88	11	54	2	11	2	82	0.89
28930--29109	89	2.0	89	94	0	315	36	19	16	27	1.93
30529--30687	61	2.6	61	81	3	189	20	18	20	40	1.92
32995--33033	19	1.9	19	85	10	51	38	0	7	53	1.30
36411--36478	29	2.3	28	79	16	75	57	0	7	35	1.27
38208--38240	3	11.0	3	100	0	66	33	33	0	33	1.58
43443--43470	12	2.3	12	100	0	56	32	42	0	25	1.55
53138--53199	24	2.8	21	72	13	61	33	1	1	62	1.14
63690--63728	17	2.3	17	82	8	53	25	5	2	66	1.25
64148--64222	6	13.0	6	72	13	59	53	4	0	42	1.19
64190--64246	17	3.4	17	85	4	80	57	3	0	38	1.16
64148--64222	23	3.3	23	86	0	105	53	4	0	42	1.19
64885--64942	27	2.2	27	90	3	91	48	5	0	46	1.24
64892--64948	26	2.1	27	87	3	80	50	5	0	43	1.24
65236--65277	19	2.2	20	86	4	59	52	0	2	45	1.13
65242--65284	19	2.3	19	83	0	50	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66911--67132	116	1.9	113	83	8	288	43	9	9	37	1.70
70227--70255	7	4.3	7	95	4	51	0	13	0	86	0.58
81900--81994	18	5.1	18	69	19	52	42	3	3	51	1.33
87728--87769	19	2.3	19	91	4	68	0	35	7	57	1.26
90213--90252	20	2.1	18	90	9	62	52	0	0	47	1.00
136910--137035	63	2.0	63	95	0	225	22	19	22	35	1.96
137737--137781	21	2.1	21	84	8	56	46	0	4	48	1.22
140424--140484	13	4.5	13	72	10	50	32	0	1	65	1.02
140414--140482	35	2.0	34	83	8	86	31	0	1	66	1.00
140427--140490	28	2.2	28	83	8	85	35	0	1	62	1.05
140445--140490	14	3.3	14	78	0	56	32	0	2	65	1.05
141975--142009	7	5.1	7	89	3	54	25	0	2	71	1.00
143817--143855	20	2.0	20	84	0	51	35	0	17	46	1.49
153934--153989	25	2.2	24	78	9	58	41	8	7	42	1.63
155418--155444	2	13.5	2	100	0	54	48	0	0	51	1.00
160916--160947	16	2.0	16	93	0	55	71	0	0	28	0.86
173170--173207	18	2.1	19	85	5	51	47	5	5	42	1.48
178686--178739	23	2.3	23	84	6	65	35	3	0	61	1.14
191061--191116	15	3.5	15	73	21	51	69	3	1	25	1.14
192500--192524	6	4.2	6	100	0	50	16	64	0	20	1.30
193565--193598	2	17.0	2	100	0	68	50	0	0	50	1.00
193598--193633	2	18.0	2	100	0	72	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195110--195193	41	2.1	41	81	2	107	36	35	10	16	1.84
195136--195247	53	2.1	53	86	0	152	32	37	10	19	1.86
195264--195364	31	3.3	31	78	0	121	25	32	18	22	1.97
196163--196228	33	1.9	36	84	9	93	59	6	25	9	1.51
197067--197192	23	5.4	23	74	10	80	11	27	23	37	1.89
200148--200204	15	3.5	15	76	17	60	45	1	0	52	1.11
201172--201201	12	2.6	11	90	10	51	30	0	0	70	0.88
216126--216263	63	2.2	63	94	0	240	51	8	2	36	1.48
223198--223223	12	2.2	12	100	0	52	69	0	0	30	0.89
229708--229756	25	2.0	25	83	0	62	38	24	12	24	1.90
230020--230085	18	3.4	18	69	18	60	25	13	21	39	1.90
230017--230098	41	2.0	41	97	0	155	24	12	25	37	1.90
234641--234700	31	1.9	31	93	0	102	41	16	13	28	1.86
236560--236596	2	18.5	2	100	0	74	51	0	0	48	1.00

Tables:   1

The End!