Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006214.1 Kokia drynarioides strain JFW-HI SEQ_120785, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4311
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33


Found at i:2649 original size:5 final size:5

Alignment explanation


    Indices: 2608--2636  Score: 51
    Period size: 5  Copynumber: 6.0  Consensus size: 5

       2598 AATACAAATT

                                               
       2608 TTTTC TTTTC TTTTC TTTTC TTTT- TTTTC
          1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC

       2637 AAATTTTCTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   4    4  0.17
   5   19  0.83

ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83


Consensus pattern (5 bp):   
TTTTC
Done.