Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006220.1 Kokia drynarioides strain JFW-HI SEQ_120791, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18332
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.38


Found at i:4951 original size:15 final size:15

Alignment explanation


    Indices: 4933--4962  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       4923 ATACAAATTC

                           
       4933 AAAAATAAAATAAAA
          1 AAAAATAAAATAAAA

                  *        
       4948 AAAAATTAAATAAAA
          1 AAAAATAAAATAAAA

       4963 TATTTTTTTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17


Consensus pattern (15 bp):   
AAAAATAAAATAAAA

Found at i:9726 original size:16 final size:17

Alignment explanation


    Indices: 9695--9728  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       9685 TATAAATCTC

                     *       
       9695 TTTAAATTTTATAAAAA
          1 TTTAAATTTAATAAAAA

                             
       9712 TTTAAA-TTAATAAAAA
          1 TTTAAATTTAATAAAAA

             
       9728 T
          1 T

       9729 AAAATTACAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16   10  0.62
  17    6  0.38

ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44


Consensus pattern (17 bp):   
TTTAAATTTAATAAAAA
Done.