Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006226.1 Kokia drynarioides strain JFW-HI SEQ_120797, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7547
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33


Found at i:5577 original size:14 final size:15

Alignment explanation


    Indices: 5556--5593  Score: 51
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       5546 TGCTAGTATA

                *          
       5556 ATTTTAAATTTTAAT
          1 ATTTAAAATTTTAAT

                           
       5571 ATTTAAAATTTT-AT
          1 ATTTAAAATTTTAAT

                     
       5585 ATTTCAAAA
          1 ATTT-AAAA

       5594 CATGAATTTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  14    6  0.29
  15   15  0.71

ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53


Consensus pattern (15 bp):   
ATTTAAAATTTTAAT
Done.