Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006227.1 Kokia drynarioides strain JFW-HI SEQ_120798, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4191
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:1876 original size:6 final size:6

Alignment explanation


    Indices: 1830--1874  Score: 63
    Period size: 6  Copynumber: 7.5  Consensus size: 6

       1820 CCCAACATCC

                *                                   *    *      
       1830 ACACGT ACACCT ACACCT ACACCT ACACCT ACACCC ACAACT ACA
          1 ACACCT ACACCT ACACCT ACACCT ACACCT ACACCT ACACCT ACA

       1875 ACCACAACCA


Statistics
Matches: 35,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   6   35  1.00

ACGTcount: A:0.38, C:0.47, G:0.02, T:0.13


Consensus pattern (6 bp):   
ACACCT

Found at i:2221 original size:60 final size:58

Alignment explanation


    Indices: 2012--2233  Score: 344
    Period size: 60  Copynumber: 3.8  Consensus size: 58

       2002 TACATTGATT

                                                     *                 
       2012 TTATTTTGAATATTTTTGTACACATTATTTTTATATTGTATGATTTAATAAAATAGAAG
          1 TTATTTTGAATATTTTTGTACACATTATTTTTATATTGTATCATTTAATAAAATA-AAG

                                  *       *                           
       2071 TTATTTTGAATA-TTTTGTACATATTA-TTATATATTGTATCATTTAATAAAAT--AG
          1 TTATTTTGAATATTTTTGTACACATTATTTTTATATTGTATCATTTAATAAAATAAAG

              *                                                        
       2125 TTCTTTTGAATATTTTTGTACACATTATTTTTATATTGTATCATTTAATAAAATAAAAG
          1 TTATTTTGAATATTTTTGTACACATTATTTTTATATTGTATCATTTAATAAAAT-AAAG

                                   *                          
       2184 TTATTTTGAATATTTTTTGTACATATTATTTTTATATTGTATCATTTAAT
          1 TTATTTTGAATA-TTTTTGTACACATTATTTTTATATTGTATCATTTAAT

       2234 TGAGAACCCA


Statistics
Matches: 149,  Mismatches: 8, Indels: 11
        0.89            0.05        0.07

Matches are distributed among these distances:
  54   13  0.09
  55   13  0.09
  56   25  0.17
  57   24  0.16
  58   13  0.09
  59   25  0.17
  60   36  0.24

ACGTcount: A:0.34, C:0.05, G:0.08, T:0.54


Consensus pattern (58 bp):   
TTATTTTGAATATTTTTGTACACATTATTTTTATATTGTATCATTTAATAAAATAAAG
Done.