genome.fa.s623.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000623.1 Kokia drynarioides strain JFW-HI SEQ_111578, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113805

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47--71	2	12.5	2	100	0	50	52	0	0	48	1.00
3606--3662	20	2.9	18	82	15	60	40	17	0	42	1.49
7727--7752	3	8.7	3	100	0	52	69	0	0	30	0.89
9114--9159	25	1.9	23	86	8	65	41	0	2	56	1.11
11374--11411	15	2.4	16	82	8	51	60	18	0	21	1.36
13985--14025	15	2.8	14	82	10	55	26	0	0	73	0.84
13995--14022	5	5.6	5	100	0	56	21	0	0	78	0.75
15004--15038	18	1.9	18	88	0	52	65	2	0	31	1.07
15798--15876	31	2.6	30	84	6	88	35	11	12	40	1.79
19460--19484	2	12.5	2	100	0	50	48	0	0	52	1.00
30847--30880	17	2.0	17	88	0	50	47	0	17	35	1.48
39139--39179	7	5.7	7	82	5	55	41	0	2	56	1.13
39147--39221	17	4.4	18	74	14	79	40	1	4	54	1.27
39156--39220	17	3.9	17	80	4	80	38	1	4	55	1.30
39147--39231	34	2.5	33	90	5	127	41	2	3	52	1.31
41101--41157	29	2.0	29	92	0	96	40	28	0	31	1.57
40981--41199	30	7.4	29	71	14	114	38	26	3	31	1.72
41491--41778	97	3.0	97	92	0	470	29	19	14	36	1.92
51398--51518	39	3.1	39	71	13	113	24	28	20	26	1.99
51374--51632	78	3.3	79	85	3	337	22	26	22	28	1.99
51414--51827	39	10.6	38	72	12	250	23	27	21	27	1.99
51374--51813	78	5.6	78	80	2	318	23	27	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51387--51675	156	1.9	156	84	1	391	23	25	22	28	1.99
51374--51747	156	2.4	154	80	4	385	22	27	22	28	1.99
51543--51792	117	2.1	117	80	0	284	23	28	21	26	1.99
51647--51932	78	3.7	77	78	2	270	24	29	18	26	1.98
51684--51852	39	4.3	38	79	4	149	25	30	17	27	1.97
52422--52501	6	13.8	6	71	11	60	42	1	2	53	1.22
52427--52486	17	3.6	17	84	4	86	38	0	3	58	1.15
54256--54727	30	15.7	30	75	10	311	35	22	2	38	1.70
54256--54728	59	7.8	59	72	12	273	35	23	2	38	1.70
55008--55297	97	3.0	96	89	0	427	29	17	15	37	1.90
61818--61863	17	2.6	17	86	10	58	41	2	2	54	1.25
62880--62904	5	5.0	5	100	0	50	80	0	0	20	0.72
63995--64033	2	19.5	2	100	0	78	51	0	0	48	1.00
65308--65348	19	2.1	20	86	13	59	41	2	0	56	1.13
69824--69878	28	2.0	28	82	7	67	30	7	1	60	1.35
71198--71282	40	2.1	40	83	12	104	34	4	12	48	1.63
71197--71282	20	4.3	20	74	15	79	33	4	12	48	1.62
71314--71338	12	2.1	12	100	0	50	48	0	16	36	1.46
76210--76287	37	2.1	37	100	0	156	37	11	23	28	1.89
80172--80213	21	2.0	21	95	0	75	7	19	30	42	1.78
80183--80307	37	3.4	37	85	4	171	8	20	32	38	1.83
82694--82793	27	3.7	26	80	9	119	39	14	24	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82694--82797	55	1.9	55	89	0	163	40	14	23	22	1.90
82694--82820	55	2.3	54	83	4	155	39	14	25	21	1.90
84452--84491	21	1.9	21	89	0	62	57	0	5	37	1.21
84610--85139	264	2.0	264	98	0	1033	32	16	7	42	1.77
90012--90053	22	1.9	22	85	9	59	61	14	11	11	1.56
94448--94485	5	7.6	5	100	0	76	39	60	0	0	0.97
104996--105091	29	3.4	28	75	5	95	20	14	15	48	1.80
105313--105337	5	5.0	5	100	0	50	20	0	0	80	0.72
105869--105903	18	1.9	18	88	0	52	20	5	22	51	1.68
109412--109493	31	2.8	30	75	17	82	42	17	8	31	1.79
113768--113805	2	19.0	2	100	0	76	50	0	0	50	1.00

Tables:   1

The End!