Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006232.1 Kokia drynarioides strain JFW-HI SEQ_120803, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4640
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34


Found at i:3362 original size:47 final size:49

Alignment explanation


    Indices: 3257--3362  Score: 130
    Period size: 47  Copynumber: 2.2  Consensus size: 49

       3247 TAATCACTTT

                                 *                          *
       3257 AATATTAAATTAATATAATATTTATCAAGATAAATAATAGATTAAATTT
          1 AATATTAAATTAATATAATATCTATCAAGATAAATAATAGATTAAATTA

                                      *       *                
       3306 AATATTAAATTAATA-AA-ATGCTATTAAGATAAGT-AT-GAATTAAATTA
          1 AATATTAAATTAATATAATAT-CTATCAAGATAAATAATAG-ATTAAATTA

                      
       3353 AATATTAAAT
          1 AATATTAAAT

       3363 CTATTAAATT


Statistics
Matches: 51,  Mismatches: 4, Indels: 6
        0.84            0.07        0.10

Matches are distributed among these distances:
  46    1  0.02
  47   22  0.43
  48   13  0.25
  49   15  0.29

ACGTcount: A:0.54, C:0.02, G:0.06, T:0.39


Consensus pattern (49 bp):   
AATATTAAATTAATATAATATCTATCAAGATAAATAATAGATTAAATTA
Done.