Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006238.1 Kokia drynarioides strain JFW-HI SEQ_120809, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3639
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30


Found at i:3421 original size:12 final size:13

Alignment explanation


    Indices: 3391--3421  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       3381 ATAAAAAGTT

                         
       3391 TAAAAAAGTAAAG
          1 TAAAAAAGTAAAG

                         
       3404 TAAAAAAGTAAAG
          1 TAAAAAAGTAAAG

            *    
       3417 GAAAA
          1 TAAAA

       3422 GTAGAATATT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.71, C:0.00, G:0.16, T:0.13


Consensus pattern (13 bp):   
TAAAAAAGTAAAG
Done.