Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006240.1 Kokia drynarioides strain JFW-HI SEQ_120811, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2117
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37


Found at i:954 original size:33 final size:33

Alignment explanation


    Indices: 917--979  Score: 92
    Period size: 33  Copynumber: 1.9  Consensus size: 33

        907 TGAATAGATT

                              *               
        917 GCTCCCCCT-TAATAAAAGTCATTTTCAATTCAA
          1 GCTCCCCCTAT-ATAAAAATCATTTTCAATTCAA

                 *                        
        950 GCTCCTCCTATATAAAAATCATTTTCAATT
          1 GCTCCCCCTATATAAAAATCATTTTCAATT

        980 TAAGGCATAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
  33   26  0.96
  34    1  0.04

ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37


Consensus pattern (33 bp):   
GCTCCCCCTATATAAAAATCATTTTCAATTCAA
Done.