Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006242.1 Kokia drynarioides strain JFW-HI SEQ_120813, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3946
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.38


Found at i:2709 original size:13 final size:12

Alignment explanation


    Indices: 2662--2702  Score: 50
    Period size: 12  Copynumber: 3.5  Consensus size: 12

       2652 TTATTATTTT

                        
       2662 ATAAAT-AT-AA
          1 ATAAATAATAAA

                         
       2672 ATAAATAAATAAA
          1 ATAAAT-AATAAA

             *          
       2685 ACAAATAATAAA
          1 ATAAATAATAAA

                  
       2697 ATAAAT
          1 ATAAAT

       2703 CATTAAATTA


Statistics
Matches: 26,  Mismatches: 2, Indels: 4
        0.81            0.06        0.12

Matches are distributed among these distances:
  10    6  0.23
  12   13  0.50
  13    7  0.27

ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24


Consensus pattern (12 bp):   
ATAAATAATAAA
Done.