Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006249.1 Kokia drynarioides strain JFW-HI SEQ_120820, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2177
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36


Found at i:1714 original size:14 final size:13

Alignment explanation


    Indices: 1678--1708  Score: 55
    Period size: 13  Copynumber: 2.5  Consensus size: 13

       1668 AGGTTTGAAA

                         
       1678 AGAAAAAAAAGAG
          1 AGAAAAAAAAGAG

                         
       1691 AGAAAAAAAAG-G
          1 AGAAAAAAAAGAG

                  
       1703 AGAAAA
          1 AGAAAA

       1709 TGAAAAAAAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  12    7  0.39
  13   11  0.61

ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00


Consensus pattern (13 bp):   
AGAAAAAAAAGAG
Done.