Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006256.1 Kokia drynarioides strain JFW-HI SEQ_120827, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3662
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35


Found at i:3237 original size:24 final size:24

Alignment explanation


    Indices: 3178--3241  Score: 85
    Period size: 24  Copynumber: 2.7  Consensus size: 24

       3168 AGAAATAATC

                                    
       3178 TTTTAGTTAAACTCTTGTTATTTG
          1 TTTTAGTTAAACTCTTGTTATTTG

               * *                   
       3202 TTTCAATTAAACT-TTGTTTATTTG
          1 TTTTAGTTAAACTCTTG-TTATTTG

                   *        
       3226 TTTTAGTCAAACTCTT
          1 TTTTAGTTAAACTCTT

       3242 ATTAGTCTAG


Statistics
Matches: 33,  Mismatches: 5, Indels: 3
        0.80            0.12        0.07

Matches are distributed among these distances:
  23    3  0.09
  24   28  0.85
  25    2  0.06

ACGTcount: A:0.23, C:0.11, G:0.09, T:0.56


Consensus pattern (24 bp):   
TTTTAGTTAAACTCTTGTTATTTG
Done.