Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006260.1 Kokia drynarioides strain JFW-HI SEQ_120831, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16646
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:2168 original size:13 final size:13

Alignment explanation


    Indices: 2129--2169  Score: 55
    Period size: 13  Copynumber: 3.2  Consensus size: 13

       2119 TGACCAACCG

                         
       2129 TTGATCGTTGACT
          1 TTGATCGTTGACT

                * *  *   
       2142 TTGACCATTAACT
          1 TTGATCGTTGACT

                         
       2155 TTGATCGTTGACT
          1 TTGATCGTTGACT

              
       2168 TT
          1 TT

       2170 TTTCGAAAAC


Statistics
Matches: 22,  Mismatches: 6, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  13   22  1.00

ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46


Consensus pattern (13 bp):   
TTGATCGTTGACT

Found at i:10874 original size:22 final size:22

Alignment explanation


    Indices: 10849--10893  Score: 81
    Period size: 22  Copynumber: 2.0  Consensus size: 22

      10839 ACTCGATACC

                                  
      10849 CTCTATTTCATCCAAGGATGCT
          1 CTCTATTTCATCCAAGGATGCT

                             *    
      10871 CTCTATTTCATCCAAGGTTGCT
          1 CTCTATTTCATCCAAGGATGCT

             
      10893 C
          1 C

      10894 CACCTAATTA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.20, C:0.29, G:0.13, T:0.38


Consensus pattern (22 bp):   
CTCTATTTCATCCAAGGATGCT

Found at i:15201 original size:20 final size:19

Alignment explanation


    Indices: 15153--15203  Score: 68
    Period size: 19  Copynumber: 2.6  Consensus size: 19

      15143 TTTAAAAATT

                                
      15153 TAATTT-ATTTGTTTAAGAA
          1 TAATTTAATTT-TTTAAGAA

                            *  
      15172 TAATTTAATTTTTTAATAA
          1 TAATTTAATTTTTTAAGAA

                         
      15191 TAATTTAAATTTT
          1 TAATTT-AATTTT

      15204 AGTTTTTAAG


Statistics
Matches: 29,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  19   19  0.66
  20   10  0.34

ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57


Consensus pattern (19 bp):   
TAATTTAATTTTTTAAGAA
Done.