Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006268.1 Kokia drynarioides strain JFW-HI SEQ_120839, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3040
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:2692 original size:29 final size:29

Alignment explanation


    Indices: 2660--2720  Score: 95
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       2650 CAAGCATTAT

                               *       * 
       2660 ATTTAATTTTTATTTTTTGGGATTTCTTC
          1 ATTTAATTTTTATTTTTTGAGATTTCTCC

                *                        
       2689 ATTTGATTTTTATTTTTTGAGATTTCTCC
          1 ATTTAATTTTTATTTTTTGAGATTTCTCC

               
       2718 ATT
          1 ATT

       2721 CTCCATGACT


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.18, C:0.08, G:0.10, T:0.64


Consensus pattern (29 bp):   
ATTTAATTTTTATTTTTTGAGATTTCTCC

Found at i:2741 original size:23 final size:23

Alignment explanation


    Indices: 2711--2755  Score: 81
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       2701 TTTTTTGAGA

                                   
       2711 TTTCTCCATTCTCCATGACTGTG
          1 TTTCTCCATTCTCCATGACTGTG

                        *         
       2734 TTTCTCCATTCTTCATGACTGT
          1 TTTCTCCATTCTCCATGACTGT

       2756 TTGGATCAGC


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  23   21  1.00

ACGTcount: A:0.13, C:0.29, G:0.11, T:0.47


Consensus pattern (23 bp):   
TTTCTCCATTCTCCATGACTGTG
Done.