Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006270.1 Kokia drynarioides strain JFW-HI SEQ_120841, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14326
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Found at i:1058 original size:17 final size:17

Alignment explanation


    Indices: 1036--1070  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1026 AACTATCAAT

                             
       1036 TCTCTCATACCAGGCCC
          1 TCTCTCATACCAGGCCC

                             
       1053 TCTCTCATACCAGGCCC
          1 TCTCTCATACCAGGCCC

             
       1070 T
          1 T

       1071 TGGAGCTTGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.17, C:0.46, G:0.11, T:0.26


Consensus pattern (17 bp):   
TCTCTCATACCAGGCCC
Done.