Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006281.1 Kokia drynarioides strain JFW-HI SEQ_120853, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1954
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32


Found at i:1809 original size:31 final size:31

Alignment explanation


    Indices: 1774--1832  Score: 75
    Period size: 31  Copynumber: 1.9  Consensus size: 31

       1764 TAAAATGATG

                  *          *              
       1774 ATTGAATTA-TTAGAAATTTTTTATTTAAATC
          1 ATTGAACTATTTA-AAAGTTTTTATTTAAATC

                                  *     
       1805 ATTGAACTATTTAAAAGTTTTTGTTTAA
          1 ATTGAACTATTTAAAAGTTTTTATTTAA

       1833 GTAACTGGTC


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  31   21  0.88
  32    3  0.12

ACGTcount: A:0.37, C:0.03, G:0.08, T:0.51


Consensus pattern (31 bp):   
ATTGAACTATTTAAAAGTTTTTATTTAAATC
Done.