Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006282.1 Kokia drynarioides strain JFW-HI SEQ_120854, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2585
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37


Found at i:2383 original size:23 final size:22

Alignment explanation


    Indices: 2357--2401  Score: 54
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       2347 GTTGAATGCC

                    *              
       2357 ATTTGGTTTGCATTCTCAATTTT
          1 ATTT-GTTGGCATTCTCAATTTT

                      *      *    
       2380 ATTTGTTGGCCTTCTCAGTTTT
          1 ATTTGTTGGCATTCTCAATTTT

       2402 CTATTACCTG


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  22   15  0.79
  23    4  0.21

ACGTcount: A:0.13, C:0.16, G:0.16, T:0.56


Consensus pattern (22 bp):   
ATTTGTTGGCATTCTCAATTTT
Done.