Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006285.1 Kokia drynarioides strain JFW-HI SEQ_120857, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2577
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38


Found at i:725 original size:73 final size:73

Alignment explanation


    Indices: 638--797  Score: 248
    Period size: 73  Copynumber: 2.2  Consensus size: 73

        628 AATTTATCAT

                   *                                    *           *        
        638 TTGTTGACATATATTTGATACAATGTCTAAAACGATATTGATATCGACCGATTTAATATTCAATC
          1 TTGTTGATATATATTTGATACAATGTCTAAAACGATATTGATATAGACCGATTTAAGATTCAATC

            ***     
        703 TGTAACAC
         66 CACAACAC

                                      *                    *                 
        711 TTGTTGATATATATTTGATACAATGTTTAAAACGATATTGATATAGATCGATTTAAGATTCAATC
          1 TTGTTGATATATATTTGATACAATGTCTAAAACGATATTGATATAGACCGATTTAAGATTCAATC

                    
        776 CACAACAC
         66 CACAACAC

                          
        784 TTGTTGATATATAT
          1 TTGTTGATATATAT

        798 AATAAAATAT


Statistics
Matches: 79,  Mismatches: 8, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  73   79  1.00

ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39


Consensus pattern (73 bp):   
TTGTTGATATATATTTGATACAATGTCTAAAACGATATTGATATAGACCGATTTAAGATTCAATC
CACAACAC
Done.