Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006290.1 Kokia drynarioides strain JFW-HI SEQ_120862, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8205
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34


Found at i:6431 original size:18 final size:18

Alignment explanation


    Indices: 6408--6450  Score: 52
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       6398 GAATAGGTTT

                               
       6408 TTAATTAAATAAATTT-AA
          1 TTAATTAAA-AAATTTAAA

                  *    *      
       6426 TTAATTGAAAATTTTAAA
          1 TTAATTAAAAAATTTAAA

                   
       6444 TTAATTA
          1 TTAATTA

       6451 CCCCTTGAAT


Statistics
Matches: 21,  Mismatches: 3, Indels: 2
        0.81            0.12        0.08

Matches are distributed among these distances:
  17    5  0.24
  18   16  0.76

ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47


Consensus pattern (18 bp):   
TTAATTAAAAAATTTAAA

Found at i:8021 original size:11 final size:11

Alignment explanation


    Indices: 8005--8048  Score: 52
    Period size: 11  Copynumber: 3.9  Consensus size: 11

       7995 GGAGACCAAC

                  *   *
       8005 GAAAAATGAAG
          1 GAAAAAAGAAA

                       
       8016 GAAAAAAGAAA
          1 GAAAAAAGAAA

                     * 
       8027 GAAAAAAGAGA
          1 GAAAAAAGAAA

                       
       8038 GAAAGAAAGAA
          1 GAAA-AAAGAA

       8049 GAAGGAAGAA


Statistics
Matches: 28,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  11   23  0.82
  12    5  0.18

ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02


Consensus pattern (11 bp):   
GAAAAAAGAAA
Done.