Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006291.1 Kokia drynarioides strain JFW-HI SEQ_120863, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4705
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36


Found at i:3686 original size:28 final size:28

Alignment explanation


    Indices: 3643--3696  Score: 81
    Period size: 28  Copynumber: 1.9  Consensus size: 28

       3633 GGTAAAAGGT

                                        
       3643 ATGACCTTTGGATCAACAAGGAGTAAGC
          1 ATGACCTTTGGATCAACAAGGAGTAAGC

                       *    * *       
       3671 ATGACCTTTGGGTCAATAGGGAGTAA
          1 ATGACCTTTGGATCAACAAGGAGTAA

       3697 ATTGAATAAC


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  28   23  1.00

ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24


Consensus pattern (28 bp):   
ATGACCTTTGGATCAACAAGGAGTAAGC
Done.