Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006293.1 Kokia drynarioides strain JFW-HI SEQ_120865, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16357
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33


Found at i:4810 original size:13 final size:15

Alignment explanation


    Indices: 4792--4825  Score: 54
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       4782 AAGGTACTTG

                           
       4792 ATAGGAA-AA-AAAA
          1 ATAGGAAGAATAAAA

                           
       4805 ATAGGAAGAATAAAA
          1 ATAGGAAGAATAAAA

                  
       4820 ATAGGA
          1 ATAGGA

       4826 GAGATGATTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  13    7  0.37
  14    2  0.11
  15   10  0.53

ACGTcount: A:0.68, C:0.00, G:0.21, T:0.12


Consensus pattern (15 bp):   
ATAGGAAGAATAAAA

Found at i:5337 original size:28 final size:28

Alignment explanation


    Indices: 5297--5350  Score: 108
    Period size: 28  Copynumber: 1.9  Consensus size: 28

       5287 CCTAGAGAAA

                                        
       5297 GAAATAAATAAAATCTCATCGAATTAAT
          1 GAAATAAATAAAATCTCATCGAATTAAT

                                      
       5325 GAAATAAATAAAATCTCATCGAATTA
          1 GAAATAAATAAAATCTCATCGAATTA

       5351 TAATCAAGGG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   26  1.00

ACGTcount: A:0.54, C:0.11, G:0.07, T:0.28


Consensus pattern (28 bp):   
GAAATAAATAAAATCTCATCGAATTAAT
Done.