Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006294.1 Kokia drynarioides strain JFW-HI SEQ_120866, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3726
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:1398 original size:27 final size:27

Alignment explanation


    Indices: 1368--1427  Score: 77
    Period size: 27  Copynumber: 2.2  Consensus size: 27

       1358 GACATGTAAT

                                  *     
       1368 ATTTTTAATTAAAT-AAATTTTTTTATA
          1 ATTTTT-ATTAAATAAAATTTTATTATA

                *                      
       1395 ATTTATATTAAATAAAATTTTATTATA
          1 ATTTTTATTAAATAAAATTTTATTATA

            *     
       1422 TTTTTT
          1 ATTTTT

       1428 CATCTCCTTC


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  26    7  0.25
  27   21  0.75

ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60


Consensus pattern (27 bp):   
ATTTTTATTAAATAAAATTTTATTATA

Done.