Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006295.1 Kokia drynarioides strain JFW-HI SEQ_120868, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3667
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32


Found at i:199 original size:26 final size:23

Alignment explanation


    Indices: 170--235  Score: 60
    Period size: 24  Copynumber: 2.6  Consensus size: 23

        160 TTAGATAAAA

                                      
        170 ATAAATAATTTATTATAATGCATTTT
          1 ATAAATAATTT-TTAT-AT-CATTTT

                   *                
        196 ATAATATTATTTTTATATCATTTT
          1 ATAA-ATAATTTTTATATCATTTT

             *              
        220 AAATAATAATATTTTA
          1 ATA-AATAAT-TTTTA

        236 ATTAAAAACA


Statistics
Matches: 34,  Mismatches: 3, Indels: 7
        0.77            0.07        0.16

Matches are distributed among these distances:
  24   12  0.35
  25    8  0.24
  26    8  0.24
  27    6  0.18

ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53


Consensus pattern (23 bp):   
ATAAATAATTTTTATATCATTTT

Found at i:318 original size:17 final size:17

Alignment explanation


    Indices: 298--333  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        288 AATATATAAA

                     *    *  
        298 TTATTATATTATATTAT
          1 TTATTATATGATATGAT

                             
        315 TTATTATATGATATGAT
          1 TTATTATATGATATGAT

              
        332 TT
          1 TT

        334 CTTACAAATG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61


Consensus pattern (17 bp):   
TTATTATATGATATGAT
Done.