Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006300.1 Kokia drynarioides strain JFW-HI SEQ_120874, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13302
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:3399 original size:22 final size:21

Alignment explanation


    Indices: 3366--3410  Score: 56
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       3356 AGATTTTTTT

                 *                
       3366 TTTTTTACATAAATTTAA-GGA
          1 TTTTTAACAT-AATTTAATGGA

                                  
       3387 TTTTTAACAATAATTTAATGGA
          1 TTTTTAAC-ATAATTTAATGGA

              
       3409 TT
          1 TT

       3411 AGCAATTGAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  21   14  0.67
  22    7  0.33

ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49


Consensus pattern (21 bp):   
TTTTTAACATAATTTAATGGA

Found at i:5609 original size:21 final size:21

Alignment explanation


    Indices: 5583--5622  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       5573 AGACAACGTC

                  *       *      
       5583 GTTTTGTCTTTTAATTTAATG
          1 GTTTTGACTTTTAACTTAATG

                               
       5604 GTTTTGACTTTTAACTTAA
          1 GTTTTGACTTTTAACTTAA

       5623 AAAAAAACTA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.23, C:0.07, G:0.12, T:0.57


Consensus pattern (21 bp):   
GTTTTGACTTTTAACTTAATG

Found at i:9207 original size:19 final size:19

Alignment explanation


    Indices: 9169--9207  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       9159 TTTATTATCA

                          **   
       9169 ATATATTTATAATTGTAAT
          1 ATATATTTATAATTAAAAT

                      *        
       9188 ATATATTTATTATTAAAAT
          1 ATATATTTATAATTAAAAT

             
       9207 A
          1 A

       9208 AAAGTGTAAT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51


Consensus pattern (19 bp):   
ATATATTTATAATTAAAAT
Done.