Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006306.1 Kokia drynarioides strain JFW-HI SEQ_120880, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3297
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35


Found at i:2240 original size:137 final size:134

Alignment explanation


    Indices: 1957--2241  Score: 453
    Period size: 137  Copynumber: 2.1  Consensus size: 134

       1947 TTATAATAAC

                *      *                                                     
       1957 AAATAATAAAAGTTGTCCCAAAGCAATGTAAGCACACAGTTATATAAATTTATTATATATTTGTG
          1 AAATTATAAAAATTGTCCCAAAGCAATGTAAGCACACAGTTATATAAATTTATTATATATTTGTG

                                          *                                  
       2022 TATTTATATTTATTTATAAAGTTTTAGTGATTTGATGTGAATTATATACCAAATTTCAATTCAAT
         66 TATTTATATTTATTTATAAAGTTTTAGTGAATTGATGTGAATTATATACCAAATTTCAATTCAAT

               *
       2087 TAAG
        131 TAAA

                             *            * *                                
       2091 AAATTATAAAAATTGTCTCAAAGCAATGTAGGTACACAGTTATATAAATTTATTATATATTTGTG
          1 AAATTATAAAAATTGTCCCAAAGCAATGTAAGCACACAGTTATATAAATTTATTATATATTTGTG

                                                               * *           
       2156 TATTTATATTTATTATTTATAAAGTTTTAGTGAATTGATGTGAATTATATATCGAATTTCAATTC
         66 TATTTATA--T-TTATTTATAAAGTTTTAGTGAATTGATGTGAATTATATACCAAATTTCAATTC

             *     
       2221 ATTTAAA
        128 AATTAAA

                          
       2228 AAATTATAAAAATT
          1 AAATTATAAAAATT

       2242 ATTTATTTAC


Statistics
Matches: 138,  Mismatches: 10, Indels: 3
        0.91            0.07        0.02

Matches are distributed among these distances:
 134   68  0.49
 136    1  0.01
 137   69  0.50

ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42


Consensus pattern (134 bp):   
AAATTATAAAAATTGTCCCAAAGCAATGTAAGCACACAGTTATATAAATTTATTATATATTTGTG
TATTTATATTTATTTATAAAGTTTTAGTGAATTGATGTGAATTATATACCAAATTTCAATTCAAT
TAAA
Done.